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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD450
Library SS
(Link to library)
Clone ID SSD450
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SSD450Z
(Link to Original site)
Representative DNA sequence 
>SSD450 (SSD450Q) /CSM/SS/SSD4-C/SSD450Q.Seq.d/
XXXXXXXXXXAAAAGATGTAGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTA
ATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTAC
GTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAA
AAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACA
ACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGG
ATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTG
TTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAAC
TTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAA
ATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAA
ATAAATAAAAAATAATCTTTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACAAAA
sequence update 1997.10. 3
Translated Amino Acid sequence 
---KDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGIISIK
EIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIV
ENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*in
k*kiif*k*kkkkkkknk
Translated Amino Acid sequence (All Frames) 
Frame A:
---KDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGIISIK
EIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIV
ENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*in
k*kiif*k*kkkkkkknk


Frame B:
---km*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqclfllirirmelfq*k
rfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*iktiqmqllhl*ll
kislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynfhf*knlnk*i
nkk*sfknkkkkkkkktk


Frame C:
---rcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnvyfs**g*gwnyfnkr
dswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqsrcncstydc*
kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiififkki*ink*
iknnllkikkkkkkkkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/                        932   0.0
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                        932   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        932   0.0
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/                        932   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        932   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                        932   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                        932   0.0
SSK850 (SSK850Q) /CSM/SS/SSK8-C/SSK850Q.Seq.d/                        932   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                        932   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                        932   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X82784) D.discoideum mRNA for calcium binding protein.           888   0.0    1
(AU076389) Dictyostelium discoideum slug cDNA, clone SSA694.      888   0.0    1
(AU061549) Dictyostelium discoideum slug cDNA, clone SLE611.      888   0.0    1
(AU039125) Dictyostelium discoideum slug cDNA, clone SSM417.      888   0.0    1
(AU039116) Dictyostelium discoideum slug cDNA, clone SSM408.      888   0.0    1
(AU039093) Dictyostelium discoideum slug cDNA, clone SSM376.      888   0.0    1
(AU039029) Dictyostelium discoideum slug cDNA, clone SSM294.      888   0.0    1
(AU038009) Dictyostelium discoideum slug cDNA, clone SSH153.      888   0.0    1
(AU037726) Dictyostelium discoideum slug cDNA, clone SSE221.      888   0.0    1
(C94491) Dictyostelium discoideum slug cDNA, clone SSL192.        888   0.0    1
dna update 2009. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    79   7e-14
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   1e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   1e-10
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    68   2e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    65   1e-09
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     65   1e-09
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   4e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   8e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   1e-06
(O64943) RecName: Full=Polcalcin Jun o 2; AltName: Full=Calcium-...    55   2e-06
protein update 2009. 6.10
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSD450 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD450Z
3' end seq. 
>SSD450Z.Seq
----------AAAAGATGTAGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTA
ATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTAC
GTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAA
AAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACA
ACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGG
ATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTG
TTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAAC
TTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAA
ATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAA
ATAAATAAAAAATAATCTTTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACAAAA
Length of 3' end seq. 587
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -