SSD429
Library SS
(Link to library)
Clone ID SSD429
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SSD429E
(Link to Original site)
Representative DNA sequence
>SSD429 (SSD429Q) /CSM/SS/SSD4-B/SSD429Q.Seq.d/
GTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAG
TGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCAT
GGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATAT
TGGATTGTAAAGAATTCTTAGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGA
AGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTAT
ACCAAATATTTAGTTTAG
sequence update 1997.10. 3
Translated Amino Acid sequence
VMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPY
WIVKNS*gadwgeqgyiylrrgkntcgvsnfvstsii*iytkylv*


Translated Amino Acid sequence (All Frames)
Frame A:
VMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPY
WIVKNS*gadwgeqgyiylrrgkntcgvsnfvstsii*iytkylv*


Frame B:
*wlgtslvldhsqlllmllsgnfilvvylifhviqihlimvf*llvtllkiqfsvkichi
gl*rilrvqigenkdtfi*eeerihvvyqtlfqlv*fkfipni*f


Frame C:
ngwvhr*ywttrncc*cc*vailywwci*ysm*skft*swyfncwllc*kynfp*kyail
dckeflgcrlgrtrihlfkkrkeymwciklcfn*ynlnlyqifsl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD429 (SSD429Q) /CSM/SS/SSD4-B/SSD429Q.Seq.d/ 630 e-180
SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/ 622 e-178
SSL190 (SSL190Q) /CSM/SS/SSL1-D/SSL190Q.Seq.d/ 622 e-178
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/ 622 e-178
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/ 622 e-178
SSH838 (SSH838Q) /CSM/SS/SSH8-B/SSH838Q.Seq.d/ 622 e-178
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/ 622 e-178
SSH510 (SSH510Q) /CSM/SS/SSH5-A/SSH510Q.Seq.d/ 622 e-178
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/ 622 e-178
SSF512 (SSF512Q) /CSM/SS/SSF5-A/SSF512Q.Seq.d/ 622 e-178

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1. 622 e-175 1
AJ510162|AJ510162.1 Cloning vector pDXA-YFP-NotI. 216 1e-52 1
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H. 216 1e-52 1
AF269235|AF269235.2 Cloning vector pDXA-GFP2, complete sequence. 216 1e-52 1
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY. 216 1e-52 1
AJ510159|AJ510159.1 Cloning vector pDXA-yFP. 216 1e-52 1
AJ510158|AJ510158.1 Cloning vector pDXA-CFP. 216 1e-52 1
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC. 216 1e-52 1
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H. 216 1e-52 1
AJ510166|AJ510166.1 Cloning vector pDXA-GST. 216 1e-52 1
dna update 2003. 8.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 202 3e-51
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)... 104 8e-22
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183... 100 2e-20
AY390282_1(AY390282|pid:none) Periserrula leucophryna cysteine p... 97 2e-19
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ... 96 5e-19
FJ907947_1(FJ907947|pid:none) Drosophila silvestris clone sv3E-Z... 96 5e-19
(Q9VN93) RecName: Full=Putative cysteine proteinase CG12163; ... 95 9e-19
AE014297_190(AE014297|pid:none) Drosophila melanogaster chromoso... 95 9e-19
EF538806_1(EF538806|pid:none) Trypanoplasma borreli cathepsin L ... 94 1e-18
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot... 94 1e-18
protein update 2009. 7. 6
PSORT

psg: 0.90 gvh: 0.52 alm: 0.40 top: 0.27 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
24.0 %: extracellular, including cell wall
24.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSD429 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSD429E
Full length Seq.
>SSD429E.Seq
GTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAG
TGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCAT
GGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATAT
TGGATTGTAAAGAATTCTTAGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGA
AGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTAT
ACCAAATATTTAGTTTAG
Length of full length seq. 318