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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD420
Library SS
(Link to library)
Clone ID SSD420
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSD420E
(Link to Original site)
Representative DNA sequence 
>SSD420 (SSD420Q) /CSM/SS/SSD4-A/SSD420Q.Seq.d/
GCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTAC
ATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAA
TAAAGTTCAAAANAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCAT
CTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTC
AATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAAT
ACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAG
CTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAAC
CAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTC
ACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATT
TAGTTCTCACTGTTCATCCAAATATTCTTAAACAACAAGAAGAAGCTGGTAACCAAGAAC
AAGAAGAACAATAAAAGAAGAACAATAAAAAAAAAAATAAAAAAATAAAAATAAAAAAAT
AAAAATNANTTNTNTATATAAATAATAATTAAATTATAATAATAA
sequence update 1999. 4. 5
Translated Amino Acid sequence 
linqlkilfsmkkrkllklhlkvkl*HVIKLFVIHHISQIKFKXGKIIRSICILNGPIPS
ADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPA
YALLGPIQEKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITGKDL
VLTVHPNILKQQEEAGNQEQEEQ*kknnkkknkkikikk*kxxxyinnn*iiii
Translated Amino Acid sequence (All Frames) 
Frame A:
a**tn*kycfr*rkeny*syi*r*ncnm**ncl*siifpk*sskxvklfvqfvf*mvqfh
llirnlnhskslshknklnvnqictlvlchplivsvqrvntlpsfqpllkpmnqrkn*hq
ltly*vqfkrnlsiflislnqllmvlptmfssqnhmmlpltlkplvkmswictreslvki
*fslfiqiflnnkkklvtknkknnkrrtikkkikk*k*knknxxxi*iiikl***


Frame B:
lnkpienivfdeekkiikvtsegetvtcdkivcdpsyfpnkvqxr*nysfnlyfewsnsi
c**ei*itpnhyptkts*tsiryvrwcyvirslclskg*ihchrfshc*nq*trerists
lrfirsnsreiclyf*fh*tnc*wycrqcfhlkii*cylsl*nhl*rchgyvqenhw*rf
sshcsskys*ttrrsw*prtrrtikeeq*kkk*knknkkikxxxxyk**lnynn


Frame C:
linqlkilfsmkkrkllklhlkvkl*HVIKLFVIHHISQIKFKXGKIIRSICILNGPIPS
ADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPA
YALLGPIQEKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDVMDMYKRITGKDL
VLTVHPNILKQQEEAGNQEQEEQ*kknnkkknkkikikk*kxxxyinnn*iiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD420 (SSD420Q) /CSM/SS/SSD4-A/SSD420Q.Seq.d/                       1235   0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/                       1170   0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/                       1162   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1160   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                       1156   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1152   0.0
CFC760 (CFC760Q) /CSM/CF/CFC7-C/CFC760Q.Seq.d/                       1152   0.0
SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/                       1140   0.0
AFD453 (AFD453Q) /CSM/AF/AFD4-C/AFD453Q.Seq.d/                       1140   0.0
SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/                       1138   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62  5e-08  2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62  5e-08  2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62  1e-05  1
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62  1e-05  1
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62  1e-05  1
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62  1e-05  1
CA784798|CA784798.1 sat89e06.y1 Gm-c1062 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1062-5964 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44  1e-05  3
BU080552|BU080552.1 saq26a11.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-5782 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44  1e-05  3
BI426472|BI426472.1 sag03f09.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-257 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44  2e-05  3
CA819801|CA819801.1 sau76c08.y1 Gm-c1071 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1071-6664 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44  2e-05  3
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09...   154   3e-48
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ...   154   3e-48
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ...   153   3e-47
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   156   5e-46
AY086920_1(AY086920|pid:none) Arabidopsis thaliana clone 29536 m...   149   5e-46
BC095329_1(BC095329|pid:none) Danio rerio GDP dissociation inhib...   161   6e-46
AC004005_24(AC004005|pid:none) Arabidopsis thaliana chromosome 2...   149   6e-46
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   156   1e-45
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   156   1e-45
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            156   1e-45
protein update 2009. 7. 6
PSORT 

 psg: 0.86  gvh: 0.39  alm: 0.47  top: 0.70  tms: 0.00  mit: 0.32  mip: 0.05
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSD420 is cyt
5' end seq. ID SSD420F
5' end seq. 
>SSD420F.Seq
GCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTAC
ATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAA
TAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCC
ATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACG
TCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAA
ATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACC
AGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGA
ACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTC
TCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGA
TTTAGTTCTCACTGTTCATCCAAATATTCTTAAACAACAAGAAGAAGCTGGTAACCAAGA
ACAAGAAGAACAATAA----------
Length of 5' end seq. 616
3' end seq. ID SSD420Z
3' end seq. 
>SSD420Z.Seq
----------ACAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATC
TGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCA
ATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATA
CATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCACT
TACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCA
ATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCAC
TTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATTTA
GTTCTCACTGTTCATCCAAATATTCTTAAACAACAAGAAGAAGCTGGTAACCAAGAACAA
GAAGAACAATAAAAAAAAAAATAAAAAAATAAAAATAAAAAAATAAAAATNANTTNTNTA
TATAAATAATAATTAAATTATAATAATAATAATAATAA
Length of 3' end seq. 568
Connected seq. ID SSD420P
Connected seq. 
>SSD420P.Seq
GCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTAC
ATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAA
TAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCC
ATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACG
TCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAA
ATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACC
AGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGA
ACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTC
TCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGA
TTTAGTTCTCACTGTTCATCCAAATATTCTTAAACAACAAGAAGAAGCTGGTAACCAAGA
ACAAGAAGAACAATAA----------ACAGGTAAAATTATTCGTTCAATTTGTATTTTGA
ATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAA
AACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCT
GTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGA
AAGAATTAGCACCACTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTC
TGATTTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATA
TGATGCTACCTCTCACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAAT
CACTGGTAAAGATTTAGTTCTCACTGTTCATCCAAATATTCTTAAACAACAAGAAGAAGC
TGGTAACCAAGAACAAGAAGAACAATAAAAAAAAAAATAAAAAAATAAAAATAAAAAAAT
AAAAATNANTTNTNTATATAAATAATAATTAAATTATAATAATAATAATAATAA
Length of connected seq. 1184
Full length Seq ID SSD420E
Full length Seq. 
>SSD420E.Seq
GCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTAC
ATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAA
TAAAGTTCAAAANAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCAT
CTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTC
AATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAAT
ACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAG
CTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAAC
CAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTC
ACTTTGAAACCACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATT
TAGTTCTCACTGTTCATCCAAATATTCTTAAACAACAAGAAGAAGCTGGTAACCAAGAAC
AAGAAGAACAATAAAAGAAGAACAATAAAAAAAAAAATAAAAAAATAAAAATAAAAAAAT
AAAAATNANTTNTNTATATAAATAATAATTAAATTATAATAATAA
Length of full length seq. 705