NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD382
Library SS
(Link to library)
Clone ID SSD382
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16079-1
Original site URL
Representative seq. ID SSD382Z
(Link to Original site)
Representative DNA sequence 
>SSD382 (SSD382Q) /CSM/SS/SSD3-D/SSD382Q.Seq.d/
XXXXXXXXXXCACCAGTTAATGTCTTTACTGATGAATTTGCAAGATCACTTTCATTCAGA
AAGGAAGTTGGTGGTAACTTTGGTGGTATTCCATACTATCGTTATAGAATCAATGAATCC
AATTGGGAAATTAATCCAGACTATTTCCAAACCATTCCATATCTTTTAAATCTTACAAGC
ATTAAAAGTGGTGCTCCAGCCTATCTTAGCAGACCAAGATTAAAGGGTATCGATGTTGGT
TATTATTATAAAGCTGGTATCACCGATTTAATCAATGATGATGAAGATCTCGACGTTTTC
GCCGATTATGAACCACGTTCTGGTAAAGCTATTCACGGTCGTTACTCACTTCAAGTAAAT
ACCTACATTCAAGGTTCTGATGGAACTAACTCTACTCTCTACAATAAATACTCTGCTTTC
CGTTCTGATGTTGTTCATCCAATGTTTTGGGGTGTCAATATCATCGCAGCCACTCAAGAA
CAAATTGATATCCTTACCAAAGCCTATAAAGTTGATTCCTTCCGTTATGCCATCACTGTT
ATTTTAATTGTTGTTGGTGGTTTCTTATCTTTAATTTCTGGTGGTCTCTTTGTACTTGAT
AAAATAATCGATTTGTAAAAAAAAAAATTAATATATTAATAATAAATTCTGTAATTATAT
AATTTTAAAAAA
sequence update 1997. 9.26
Translated Amino Acid sequence 
---PVNVFTDEFARSLSFRKEVGGNFGGIPYYRYRINESNWEINPDYFQTIPYLLNLTSI
KSGAPAYLSRPRLKGIDVGYYYKAGITDLINDDEDLDVFADYEPRSGKAIHGRYSLQVNT
YIQGSDGTNSTLYNKYSAFRSDVVHPMFWGVNIIAATQEQIDILTKAYKVDSFRYAITVI
LIVVGGFLSLISGGLFVLDKIIDL*kkkliy***il*lynfkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ts*cly**ickitfiqkgsww*lwwysilsl*nq*iqlgn*srlfpnhsisfksykh
*kwcssls*qtkikgyrcwlll*swyhrfnq***rsrrfrrl*ttfw*sysrslltssky
lhsrf*wn*lyslq*ilcfpf*ccssnvlgcqyhrshsrtn*ypyqsl*s*flplchhcy
fnccwwflifnfwwslct**nnrfvkkkiniliinsvii*f*k


Frame B:
---PVNVFTDEFARSLSFRKEVGGNFGGIPYYRYRINESNWEINPDYFQTIPYLLNLTSI
KSGAPAYLSRPRLKGIDVGYYYKAGITDLINDDEDLDVFADYEPRSGKAIHGRYSLQVNT
YIQGSDGTNSTLYNKYSAFRSDVVHPMFWGVNIIAATQEQIDILTKAYKVDSFRYAITVI
LIVVGGFLSLISGGLFVLDKIIDL*kkkliy***il*lynfkk


Frame C:
---qlmsllmnlqdhfhserklvvtlvvfhtiviesmnpigkliqtiskpfhif*ilqal
kvvlqpiladqd*rvsmlviiiklvspi*smmmkistfspimnhvlvklftvvthfk*ip
tfkvlmeltllstintllsvlmlfiqcfgvsissqplknklislpkpiklipsvmpsllf
*lllvvsyl*flvvslylik*sickkkn*yinnkfcnyiilk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD382 (SSD382Q) /CSM/SS/SSD3-D/SSD382Q.Seq.d/                       1247   0.0
SHK633 (SHK633Q) /CSM/SH/SHK6-B/SHK633Q.Seq.d/                       1185   0.0
FC-BK09 (FC-BK09Q) /CSM/FC/FC-BK/FC-BK09Q.Seq.d/                     1172   0.0
FC-475 (FC-475Q) /CSM/CG/CG-FC/FC-475Q.Seq.d/                        1172   0.0
FC-IC0568 (FC-IC0568Q) /CSM/FC-IC/FC-IC0568Q.Seq.d/                  1156   0.0
VHC696 (VHC696Q) /CSM/VH/VHC6-D/VHC696Q.Seq.d/                       1154   0.0
VHH864 (VHH864Q) /CSM/VH/VHH8-C/VHH864Q.Seq.d/                       1142   0.0
FC-IC1396 (FC-IC1396Q) /CSM/FC-IC/FC-IC1396Q.Seq.d/                  1132   0.0
VHC394 (VHC394Q) /CSM/VH/VHC3-D/VHC394Q.Seq.d/                       1102   0.0
VHB736 (VHB736Q) /CSM/VH/VHB7-B/VHB736Q.Seq.d/                       1096   0.0
own update 2002.12.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF238324|AF238324.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpB) mRNA, complete cds.  1201   0.0    1
AB035878|AB035878.1 Ceratovacuna longifila mitochondrial genes for small subunit rRNA, tRNA-Val, large subunit rRNA, partial and complete sequences.    44   0.003  3
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    30   0.005  10
X13607|X13607.1 Chicken vitellogenin II gene.                      30   0.006  3
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  32   0.012  12
AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.    32   0.015  7
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.016  13
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    34   0.017  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.018  17
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    38   0.019  11
dna update 2004. 2. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9BKJ9) RecName: Full=Lysosome membrane protein 2-B; AltName: F...   367   e-100
(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F...    49   2e-04
AF238325_1(AF238325|pid:none) Dictyostelium discoideum lysosomal...    49   2e-04
DQ914655_1(DQ914655|pid:none) Salmo salar scavenger receptor cla...    47   5e-04
(Q60417) RecName: Full=Scavenger receptor class B member 1;     ...    45   0.001
(P27615) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    45   0.003
AY283278_1(AY283278|pid:none) Oryctolagus cuniculus scavenger re...    43   0.007
AY283277_1(AY283277|pid:none) Oryctolagus cuniculus scavenger re...    43   0.007
(P97943) RecName: Full=Scavenger receptor class B member 1;     ...    43   0.010
AY451993_1(AY451993|pid:none) Rattus norvegicus scavenger recept...    43   0.010
protein update 2009. 6.10
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.20  top: 0.40  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 20.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSD382 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD382Z
3' end seq. 
>SSD382Z.Seq
----------CACCAGTTAATGTCTTTACTGATGAATTTGCAAGATCACTTTCATTCAGA
AAGGAAGTTGGTGGTAACTTTGGTGGTATTCCATACTATCGTTATAGAATCAATGAATCC
AATTGGGAAATTAATCCAGACTATTTCCAAACCATTCCATATCTTTTAAATCTTACAAGC
ATTAAAAGTGGTGCTCCAGCCTATCTTAGCAGACCAAGATTAAAGGGTATCGATGTTGGT
TATTATTATAAAGCTGGTATCACCGATTTAATCAATGATGATGAAGATCTCGACGTTTTC
GCCGATTATGAACCACGTTCTGGTAAAGCTATTCACGGTCGTTACTCACTTCAAGTAAAT
ACCTACATTCAAGGTTCTGATGGAACTAACTCTACTCTCTACAATAAATACTCTGCTTTC
CGTTCTGATGTTGTTCATCCAATGTTTTGGGGTGTCAATATCATCGCAGCCACTCAAGAA
CAAATTGATATCCTTACCAAAGCCTATAAAGTTGATTCCTTCCGTTATGCCATCACTGTT
ATTTTAATTGTTGTTGGTGGTTTCTTATCTTTAATTTCTGGTGGTCTCTTTGTACTTGAT
AAAATAATCGATTTGTAAAAAAAAAAATTAATATATTAATAATAAATTCTGTAATTATAT
AATTTTAAAAAA
Length of 3' end seq. 662
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -