NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD370
Library SS
(Link to library)
Clone ID SSD370
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14349-1
Original site URL
Representative seq. ID SSD370E
(Link to Original site)
Representative DNA sequence 
>SSD370 (SSD370Q) /CSM/SS/SSD3-C/SSD370Q.Seq.d/
ATAAAAAACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTTTCA
ACCTTCAACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCTGAC
GATTCAAAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTC
ACCAAATGTCTCCCAGAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAAGAA
GAAGGTGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAACATT
AAAAAGAAAATGATGGCCACCTCATCAAAAGACTCTTTACGTAAAGCCTGTGTTGGTATC
CAAGTTGAAATCCAAGGTACCGATGCCTCTGAAGTCAAAGATTCATGTTTCTATGAAAAA
TGTACCAAAATCTAAATAATTTGAAAAAATTTAAAAAAAAAAAAAAAAAAAAAACTCCCG
AGGAACGAATTCAATATTTATAAATAGTAATAAATCTCCTCATACATATAATTTAATAAA
ATAATCTGTATTTTCTAAA
sequence update 1997. 9.26
Translated Amino Acid sequence 
iknyi*KMSSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEF
TKCLPENECRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGI
QVEIQGTDASEVKDSCFYEKCTKI*ii*knlkkkkkkklprnefniyk***issyi*fnk
iicif*
Translated Amino Acid sequence (All Frames) 
Frame A:
iknyi*KMSSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEF
TKCLPENECRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGI
QVEIQGTDASEVKDSCFYEKCTKI*ii*knlkkkkkkklprnefniyk***issyi*fnk
iicif*


Frame B:
*ktiykkclqvll*lqtafqpsti*s*vvnmvvsstesltiqkkslltppyqlvvhsmns
pnvsqktnvdtlsstintkkkvpkraksvllpgaqipptlkrk*wpphqktlyvkpvlvs
klkskvpmplkskihvsmknvpksk*feki*kkkkkknsrgtnsifinsnksphtynlik
*svfsk


Frame C:
kklyiknvfrycfssklrfnlqrfkvrs*iwwyhlqnl*rfkrnhc*lhltswlfir*ih
qmsprkrm*ircprlsiqrrrcpkeqnlfcclvpryrqh*kendghlikrlft*slcwyp
s*npryrcl*sqrfmfl*kmyqnlnnlkkfkkkkkkktpeeriqyl*ivinllihii**n
nlyfl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ890 (VSJ890Q) /CSM/VS/VSJ8-D/VSJ890Q.Seq.d/                        896   0.0
VSJ584 (VSJ584Q) /CSM/VS/VSJ5-D/VSJ584Q.Seq.d/                        896   0.0
VSJ550 (VSJ550Q) /CSM/VS/VSJ5-C/VSJ550Q.Seq.d/                        896   0.0
VSJ437 (VSJ437Q) /CSM/VS/VSJ4-B/VSJ437Q.Seq.d/                        896   0.0
VSG665 (VSG665Q) /CSM/VS/VSG6-C/VSG665Q.Seq.d/                        896   0.0
VSD383 (VSD383Q) /CSM/VS/VSD3-D/VSD383Q.Seq.d/                        896   0.0
VFL333 (VFL333Q) /CSM/VF/VFL3-B/VFL333Q.Seq.d/                        896   0.0
VFE845 (VFE845Q) /CSM/VF/VFE8-B/VFE845Q.Seq.d/                        896   0.0
VFA592 (VFA592Q) /CSM/VF/VFA5-D/VFA592Q.Seq.d/                        896   0.0
SSM482 (SSM482Q) /CSM/SS/SSM4-D/SSM482Q.Seq.d/                        896   0.0
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D37981|D37981.1 Dictyostelium discoidium DDCOF2 gene for cofilin, complete cds.   896  0.0  2
D37980|D37980.1 Dictyostelium discoidium DDCOF1 gene for cofilin, complete cds (exon1-2).   850  0.0  3
X04004|X04004.1 Dictyostelium discoideum mRNA for contact site A (csA) protein.   168  5e-38  1
AL929264|AL929264.4 Zebrafish DNA sequence from clone CH211-59C24 in linkage group 18.    44  0.005  5
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38  0.018  7
AC025211|AC025211.8 Homo sapiens chromosome , clone RP11-220C2, complete sequence.    36  0.050  4
AL603914|AL603914.3 Human DNA sequence from clone RP11-569A2 on chromosome 6.    48  0.087  2
AC024830|AC024830.2 Caenorhabditis elegans cosmid Y55F3BR, complete sequence.    48  0.12  1
AL606471|AL606471.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-279L1.    48  0.12  1
AC132787|AC132787.3 Rattus norvegicus clone CH230-297M3, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.16  3
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54706) RecName: Full=Cofilin-1;  &D37980_1(D37980|pid:none) &D...   280   1e-74
(P37167) RecName: Full=Actophorin;  &M93361_1(M93361|pid:none)        130   2e-29
FM992692_38(FM992692|pid:none) Candida dubliniensis CD36 chromos...   125   8e-28
(Q96VU9) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...   125   1e-27
AY428595_1(AY428595|pid:none) Helianthus annuus clone HA10-7 put...   123   3e-27
CP000501_299(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...   120   3e-26
(Q9HF97) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...   119   7e-26
(Q6CQ22) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...   119   7e-26
CU928179_306(CU928179|pid:none) Zygosaccharomyces rouxii strain ...   116   4e-25
(Q03048) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi...   116   4e-25
protein update 2009. 7. 6
PSORT 

 psg: 0.91  gvh: 0.46  alm: 0.50  top: 0.60  tms: 0.00  mit: 0.30  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSD370 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSD370E
Full length Seq. 
>SSD370E.Seq
ATAAAAAACTATATATAAAAAATGTCTTCAGGTATTGCTTTAGCTCCAAACTGCGTTTCA
ACCTTCAACGATTTAAAGTTAGGTCGTAAATATGGTGGTATCATCTACAGAATCTCTGAC
GATTCAAAAGAAATCATTGTTGACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTC
ACCAAATGTCTCCCAGAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAAGAA
GAAGGTGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACCGCCAACATT
AAAAAGAAAATGATGGCCACCTCATCAAAAGACTCTTTACGTAAAGCCTGTGTTGGTATC
CAAGTTGAAATCCAAGGTACCGATGCCTCTGAAGTCAAAGATTCATGTTTCTATGAAAAA
TGTACCAAAATCTAAATAATTTGAAAAAATTTAAAAAAAAAAAAAAAAAAAAAACTCCCG
AGGAACGAATTCAATATTTATAAATAGTAATAAATCTCCTCATACATATAATTTAATAAA
ATAATCTGTATTTTCTAAA
Length of full length seq. 559