>SSD363 (SSD363Q) /CSM/SS/SSD3-C/SSD363Q.Seq.d/
XXXXXXXXXXTGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATG
GTGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAAT
CTTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTG
GTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACA
TCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTG
GTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTG
GTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATT
CTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACAT
GTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAATATTTGTTTT
AGAAAAAAAAAAAAAAAA

---ECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIG
AKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVG
YSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytkylf*
kkkkk

Frame A:
---ECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIG
AKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVG
YSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytkylf*
kkkkk


Frame B:
---svwnmkvnklvmrvvmvvfnqmhiiislkmvefkqnlhiltllkqvhnvtltlpilv
qrfpilq*sqrmkl*wlgtslvldhsqlllmllsgnfilvvylifhviqihlimvf*llv
tllkiqfsvkichigl*rilgvqigenkdtfi*eeerihvvyqtlfqlv*fkfipnicfr
kkkkk


Frame C:
---vygi*r*tsl**gl*wwsstkci*lyh*kwwnsnrifislhc*nrytm*l*lcqywc
kdfqfyndpke*ncngwvhr*ywttrncc*cc*vailywwci*ysm*skft*swyfncwl
lc*kynfp*kyaildckeflgcrlgrtrihlfkkrkeymwciklcfn*ynlnlyqifvle
kkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD363 (SSD363Q) /CSM/SS/SSD3-C/SSD363Q.Seq.d/                       1055   0.0
SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                       1041   0.0
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/                       1041   0.0
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                       1041   0.0
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/                       1041   0.0
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/                       1041   0.0
SSF512 (SSF512Q) /CSM/SS/SSF5-A/SSF512Q.Seq.d/                       1041   0.0
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/                       1041   0.0
SSE172 (SSE172Q) /CSM/SS/SSE1-C/SSE172Q.Seq.d/                       1041   0.0
SLI528 (SLI528Q) /CSM/SL/SLI5-B/SLI528Q.Seq.d/                       1041   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.     1033   0.0    1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                   202   8e-50  2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   202   8e-50  2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   202   8e-50  2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                    202   8e-50  2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   202   8e-50  2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   202   9e-50  2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   202   9e-50  2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   202   9e-50  2
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                      202   9e-50  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   358   4e-98
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   179   6e-44
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...   175   6e-43
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot...   175   6e-43
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)...   165   8e-40
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183...   165   8e-40
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   163   2e-39
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20...   163   2e-39
AB267820_1(AB267820|pid:none) Ipomoea nil In15 mRNA for cysteine...   162   4e-39
AB270920_1(AB270920|pid:none) Phaseolus vulgaris CP2 gene for cy...   162   7e-39

 psg: 0.75  gvh: 0.27  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSD363 is nuc

>SSD363Z.Seq
----------TGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATG
GTGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAAT
CTTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTG
GTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACA
TCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTG
GTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTG
GTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATT
CTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACAT
GTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAATATTTGTTTT
AGAAAAAAAAAAAAAAAA