>SSD329 (SSD329Q) /CSM/SS/SSD3-B/SSD329Q.Seq.d/
AATAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATA
GTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATA
AAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAANAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGGGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATXXXXXXXXXX

nk*kkkkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkknkkk***aipwdleki
kkfkkkiknnkk*kxnkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISGSTND
APQVSSGLIHHIPMQLSQMYKQSLTKK---

Frame A:
nk*kkkkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkknkkk***aipwdleki
kkfkkkiknnkk*kxnkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISGSTND
APQVSSGLIHHIPMQLSQMYKQSLTKK---


Frame B:
inkkkkkkikknlisfkmv*f**kkkknhyh***kknkk*kkkkikknnnklyhgt*rk*
kslkkk*kiiknkxkikkktfktllllfgasvklmlrclsppllcitllklr*srapltm
llkypqg*sitflcnslkcissl*qkk---


Frame C:
*ikkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkkk*kkiiisytmglrenk
kv*kknkk**kikxk*kkkllklsfyflvllls*c*gvslplcfallssssdnlglh*rc
sssilrvnpshsyatlsnv*avfnkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD329 (SSD329Q) /CSM/SS/SSD3-B/SSD329Q.Seq.d/                        387   e-106
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        379   e-104
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        379   e-104
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        379   e-104
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        379   e-104
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        379   e-104
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        379   e-104
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        379   e-104
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        379   e-104
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        379   e-104

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    379   e-123  3
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50   0.027  1
BM028890|BM028890.1 IpSkn01670 Skin cDNA library Ictalurus punctatus cDNA 5' similar to Ictacalcin, mRNA sequence.    32   1.7    2
AC109150|AC109150.4 Mus musculus clone RP24-536C12, WORKING DRAFT SEQUENCE, 6 ordered pieces.    44   1.7    1
AL844180|AL844180.6 Mouse DNA sequence from clone RP23-403A4 on chromosome 4.    44   1.7    1
AC100496|AC100496.1 Mus musculus clone RP23-143E17, LOW-PASS SEQUENCE SAMPLING.    44   1.7    1
AX508705|AX508705.1 Sequence 3400 from Patent WO0216655.           42   6.6    1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42   6.6    1
AL356014|AL356014.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F25L23.    42   6.6    1
AC098812|AC098812.3 Papio cynocephalus anubis clone RP41-440G22, complete sequence.    42   6.6    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 337,540,805

 psg: 0.90  gvh: 0.38  alm: 0.51  top: 0.37  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSD329 is nuc

>SSD329F.Seq
AATAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATA
GTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATA
AAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAANAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGGGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAAT----------