>SSD327 (SSD327Q) /CSM/SS/SSD3-B/SSD327Q.Seq.d/
XXXXXXXXXXAACAAGGGTATTGACACTGAAAGTAGTTACCCATATACTGCTGAAACTGG
TTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACAT
TACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGC
AATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAA
ATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAA
AGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGA
TAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTA
TTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTC
AAAGGATAGAAAGAATANTTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGAT
TTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTT
CTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTAAA

---KGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAI
DASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDN
KVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNXCGIASVSSYPLA*iy
gskmnrrmfgsi**pemffy*knknknnnf*l*

Frame A:
---trvltlkvvthillklvqhvysinlilvqplkvmltllpvqrfh*rmvlnmvqyllq
lmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmki
iklnplmihlivldqrqiiigslkihgvphgv*kvtf*cqrierixvvlhqlalihlprf
mvpk*igecldlssnlkcfsikkikikiiisnck


Frame B:
---qgy*h*k*lpiyc*nwfnmfiq*i*ywcnh*rlc*hycrfrdfirewcstwssiccn
*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r*
*s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*kexlwycis*llstcldl
wfqne*envwiylvt*nvfllkk*k*k**fliv


Frame C:
---KGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAI
DASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDN
KVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNXCGIASVSSYPLA*iy
gskmnrrmfgsi**pemffy*knknknnnf*l*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD327 (SSD327Q) /CSM/SS/SSD3-B/SSD327Q.Seq.d/                       1174   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1166   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1166   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1166   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1166   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1166   0.0
SSC639 (SSC639Q) /CSM/SS/SSC6-B/SSC639Q.Seq.d/                       1166   0.0
SSA431 (SSA431Q) /CSM/SS/SSA4-B/SSA431Q.Seq.d/                       1166   0.0
SLG775 (SLG775Q) /CSM/SL/SLG7-D/SLG775Q.Seq.d/                       1166   0.0
SLB708 (SLB708Q) /CSM/SL/SLB7-A/SLB708Q.Seq.d/                       1166   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.  1166   0.0    1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   910   0.0    3
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   587   e-180  2
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    70   3e-35  4
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88   5e-35  4
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88   4e-29  5
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82   1e-11  1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56   6e-08  2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46   7e-07  2
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50   5e-06  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   342   7e-93
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   179   5e-44
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   179   5e-44
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   167   2e-40
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   165   9e-40
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   164   3e-39
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   161   2e-38
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   160   3e-38
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like...   160   3e-38
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   160   4e-38

 psg: 0.75  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSD327 is cyt

>SSD327Z.Seq
----------AACAAGGGTATTGACACTGAAAGTAGTTACCCATATACTGCTGAAACTGG
TTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACAT
TACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGC
AATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAA
ATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAA
AGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGA
TAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTA
TTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTC
AAAGGATAGAAAGAATANTTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGAT
TTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTT
CTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTAAA