>SSD315 (SSD315Q) /CSM/SS/SSD3-A/SSD315Q.Seq.d/
XXXXXXXXXXCTAAATATGCTGCAGGTGAATTCTCAAACTCTGTAATTGAAAACGTTTCA
AATCCAACCATCGCCGTCAAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACT
TTTGAGAAAATCTCTGAAGGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAA
GGTGGTCAACAAATTAATAAATCTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATT
GCTCTCGCTTCTTTACAAACTGCTTTCATTACATTGGATGAAGTTATTAAAATTACAAAT
AGACGTGTTAATGCAATTGAATACGTAGTTAAACCAAAACTTGAAAATACCATCAGTTAT
ATTATTACAGAGTTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAA
GGTAAAAAGAAGAAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAACTCTGCAAAT
AAAACAATCATGGAACCAGCCTCTGTTCATAAAGTTAGAAGTCTCATCGATGATGAACCA
GAAGATGCTGAATTATTATATGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAAT
AATAAAATAAAAATAAAAATAAAAAAAAAAAA

---KYAAGEFSNSVIENVSNPTIAVKMTTENVAGVHLPTFEKISEGVVSNSQELTGLSKG
GQQINKSRESHIKAVEALIALASLQTAFITLDEVIKITNRRVNAIEYVVKPKLENTISYI
ITELDESEREEFYRLKKVQGKKKKDLKAKEAQKEENSANKTIMEPASVHKVRSLIDDEPE
DAELLYED*iylkkiik*nnkikikikkk

Frame A:
---*iccr*ilklcn*krfksnhrrqndh*kccwcsftnf*enl*rcr*qftrtywsfkr
wstn**is*ith*scrsfncsrfftncfhyig*sy*nyk*tc*cn*irs*tkt*kyhqly
yyrvg*k*krrvlqieessr*keerfeskrstkrrklck*nnhgtslcs*s*kshr**tr
rc*iii*rlnlfkknnkik**nknknkkkk


Frame B:
---KYAAGEFSNSVIENVSNPTIAVKMTTENVAGVHLPTFEKISEGVVSNSQELTGLSKG
GQQINKSRESHIKAVEALIALASLQTAFITLDEVIKITNRRVNAIEYVVKPKLENTISYI
ITELDESEREEFYRLKKVQGKKKKDLKAKEAQKEENSANKTIMEPASVHKVRSLIDDEPE
DAELLYED*iylkkiik*nnkikikikkk


Frame C:
---nmlqvnsqtl*lktfqiqpspsk*plkmllvfiyqllrkslkvslaihknllvfqkv
vnklinlvnhtlklskl*llsllykllslhwmkllklqidvlmqlnt*lnqnlkipsvil
lqswmkvkeksftd*rkfkvkrrki*kqkkhkkkktlqikqswnqplfiklevssmmnqk
mlnyymkikfi*kk**nkiik*k*k*kkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD315 (SSD315Q) /CSM/SS/SSD3-A/SSD315Q.Seq.d/                        817   0.0
SSM309 (SSM309Q) /CSM/SS/SSM3-A/SSM309Q.Seq.d/                        785   0.0
SLA588 (SLA588Q) /CSM/SL/SLA5-D/SLA588Q.Seq.d/                        775   0.0
SSJ174 (SSJ174Q) /CSM/SS/SSJ1-D/SSJ174Q.Seq.d/                        763   0.0
SSE424 (SSE424Q) /CSM/SS/SSE4-A/SSE424Q.Seq.d/                        686   0.0
SSH196 (SSH196Q) /CSM/SS/SSH1-D/SSH196Q.Seq.d/                        613   e-174
SSD517 (SSD517Q) /CSM/SS/SSD5-A/SSD517Q.Seq.d/                        557   e-158
SSB847 (SSB847Q) /CSM/SS/SSB8-B/SSB847Q.Seq.d/                        541   e-153
SSF460 (SSF460Q) /CSM/SS/SSF4-C/SSF460Q.Seq.d/                        454   e-127
SSH679 (SSH679Q) /CSM/SS/SSH6-D/SSH679Q.Seq.d/                        206   3e-52

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   492   0.0    7
BI506390|BI506390.1 BB170024A20D04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170024A20D04 5', mRNA sequence.    64   4e-12  3
AW570895|AW570895.1 ra12e05.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;contains Alu repetitive element;, mRNA sequence.    76   7e-10  1
AW588730|AW588730.1 ra03h09.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence.    68   2e-07  1
CD147641|CD147641.1 ML1-0007T-V150-B09-U.B ML1-0007 Schistosoma mansoni cDNA clone ML1-0007T-V150-B09.B, mRNA sequence.    56   3e-07  3
CD147632|CD147632.1 ML1-0007T-V150-A12-U.B ML1-0007 Schistosoma mansoni cDNA clone ML1-0007T-V150-A12.B, mRNA sequence.    56   3e-07  3
BQ836546|BQ836546.1 rf47c05.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:VATD_CAEEL P34462 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence.    66   6e-07  1
CA994913|CA994913.1 rg20g04.y1 Meloidogyne hapla J2 SL1 TOPO v1 Meloidogyne hapla cDNA 5' similar to SW:VATD_CAEEL P34462 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence.    66   6e-07  1
AZ540512|AZ540512.1 ENTDE86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   4e-06  3
BU720627|BU720627.1 SJM2BDG06 SJM Schistosoma japonicum cDNA, mRNA sequence.    48   3e-05  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK146129_1(AK146129|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   160   2e-38
(Q5RCS8) RecName: Full=V-type proton ATPase subunit D;          ...   160   3e-38
BC031002_1(BC031002|pid:none) Homo sapiens ATPase, H+ transporti...   159   5e-38
BT079344_1(BT079344|pid:none) Esox lucius clone eluc-evq-534-179...   159   6e-38
AL928824_3(AL928824|pid:none) Zebrafish DNA sequence from clone ...   159   8e-38
BT043620_1(BT043620|pid:none) Salmo salar clone HM4_3768 ATPase ...   158   1e-37
(P39942) RecName: Full=V-type proton ATPase subunit D;          ...   158   1e-37
AK150981_1(AK150981|pid:none) Mus musculus bone marrow macrophag...   158   1e-37
BT081771_1(BT081771|pid:none) Rana catesbeiana clone rcat-evr-50...   158   1e-37
BT077568_1(BT077568|pid:none) Lepeophtheirus salmonis clone lsal...   156   5e-37

 psg: 0.68  gvh: 0.34  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSD315 is cyt

>SSD315Z.Seq
----------CTAAATATGCTGCAGGTGAATTCTCAAACTCTGTAATTGAAAACGTTTCA
AATCCAACCATCGCCGTCAAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACT
TTTGAGAAAATCTCTGAAGGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAA
GGTGGTCAACAAATTAATAAATCTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATT
GCTCTCGCTTCTTTACAAACTGCTTTCATTACATTGGATGAAGTTATTAAAATTACAAAT
AGACGTGTTAATGCAATTGAATACGTAGTTAAACCAAAACTTGAAAATACCATCAGTTAT
ATTATTACAGAGTTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAA
GGTAAAAAGAAGAAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAACTCTGCAAAT
AAAACAATCATGGAACCAGCCTCTGTTCATAAAGTTAGAAGTCTCATCGATGATGAACCA
GAAGATGCTGAATTATTATATGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAAT
AATAAAATAAAAATAAAAATAAAAAAAAAAAA