>SSD274 (SSD274Q) /CSM/SS/SSD2-D/SSD274Q.Seq.d/
XXXXXXXXXXGTAGATCATTCGATAATACACCACCAAATTTCAATTCATTCCTAAGAAAT
CCTCATAGTTCCTATACTTCCTATATTGGTACTCCACAATATATGGCAGTTGAGGTGGTT
CAAGGTGTAAATTATTCAAAACTTTGTGATTTTTGGTCATTGGGTGCTATCCTTTTCGAA
TTGGTAACTGGTCAAGCTTTATTTGTTGAATCACCAGATACAACCGAACAAAAGATTAGA
GAAAACATTGGTAATTGGAGAGGTCTTTTAAATACTGCAGTACAAAAGAATCAACCAATG
TCAAAACAAGCTGAATCTTTAATTAGAGAATGTATTGCTCCAGAACGTAAACGTCCTGAT
GCTTCAACCATTAAAAAACATCCATTCTTTGAAGGTATTAATTGGGAAGAAATGGCAAAT
TTCAATGTTGAACCACCTTTTAAACCAACTTTATCAAGTGATGATGATATTTCTTATTTT
ACAAATTAAATTAAAAAATCAAAAAA

---RSFDNTPPNFNSFLRNPHSSYTSYIGTPQYMAVEVVQGVNYSKLCDFWSLGAILFEL
VTGQALFVESPDTTEQKIRENIGNWRGLLNTAVQKNQPMSKQAESLIRECIAPERKRPDA
STIKKHPFFEGINWEEMANFNVEPPFKPTLSSDDDISYFTN*ikksk

Frame A:
---*iir*yttkfqfipkkss*flyflywystiygs*ggsrcklfktl*flvigcypfri
gnwssfic*itrynrtkd*rkhw*lersfkycstkestnvkts*ifn*rmycsrt*ts*c
fnh*ktsil*ry*lgrngkfqc*ttf*tnfik***yflfykln*kikk


Frame B:
---RSFDNTPPNFNSFLRNPHSSYTSYIGTPQYMAVEVVQGVNYSKLCDFWSLGAILFEL
VTGQALFVESPDTTEQKIRENIGNWRGLLNTAVQKNQPMSKQAESLIRECIAPERKRPDA
STIKKHPFFEGINWEEMANFNVEPPFKPTLSSDDDISYFTN*ikksk


Frame C:
---dhsiihhqisihs*eilivpilpilvlhniwqlrwfkv*iiqnfvifghwvlsfsnw
*lvklyllnhqiqpnkrlektlvigevf*ilqykrinqcqnklnl*lenvllqnvnvlml
qplknihslkvligkkwqismlnhllnqlyqvmmiflilqiklknqk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL536 (SSL536Q) /CSM/SS/SSL5-B/SSL536Q.Seq.d/                        955   0.0
SSD274 (SSD274Q) /CSM/SS/SSD2-D/SSD274Q.Seq.d/                        955   0.0
CHA364 (CHA364Q) /CSM/CH/CHA3-C/CHA364Q.Seq.d/                        846   0.0
SSJ373 (SSJ373Q) /CSM/SS/SSJ3-D/SSJ373Q.Seq.d/                        615   e-175
AFL496 (AFL496Q) /CSM/AF/AFL4-D/AFL496Q.Seq.d/                         40   0.032
VSH743 (VSH743Q) /CSM/VS/VSH7-B/VSH743Q.Seq.d/                         36   0.50
VHQ454 (VHQ454Q) /CSM/VH/VHQ4-C/VHQ454Q.Seq.d/                         36   0.50
VHO636 (VHO636Q) /CSM/VH/VHO6-B/VHO636Q.Seq.d/                         36   0.50
VHO243 (VHO243Q) /CSM/VH/VHO2-B/VHO243Q.Seq.d/                         36   0.50
VHN501 (VHN501Q) /CSM/VH/VHN5-A/VHN501Q.Seq.d/                         36   0.50

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CF089483|CF089483.1 QHM22O10.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM22O10, mRNA sequence.    58  1e-04  1
CF090807|CF090807.1 QHM6D05.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM6D05, mRNA sequence.    58  1e-04  1
CB084130|CB084130.1 hq10c11.b1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hq10c11, mRNA sequence.    50  0.026  1
CB084528|CB084528.1 hq16g12.b1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hq16g12, mRNA sequence.    48  0.10  1
AC121267|AC121267.12 Mus musculus clone RP24-444E1, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    46  0.41  1
AC112967|AC112967.9 Mus musculus clone RP24-151O21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    46  0.41  1
AZ690550|AZ690550.1 ENTKF75TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.41  1
BH162351|BH162351.1 ENTSG32TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.41  1
AZ534256|AZ534256.1 ENTCK34TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.41  1
AC097069|AC097069.6 Rattus norvegicus clone CH230-8O2, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.6  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FH3) RecName: Full=Probable serine/threonine-protein kinase ...   330   2e-89
AP007155_892(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    99   6e-20
DQ116039_1(DQ116039|pid:none) Aspergillus oryzae serine/threonin...    99   6e-20
AM920437_499(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    91   2e-17
(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...    90   3e-17
AB218429_1(AB218429|pid:none) Schizophyllum commune stk-5 mRNA f...    90   3e-17
(Q54IF2) RecName: Full=Probable serine/threonine-protein kinase ...    88   1e-16
T28666(T28666) protein kinase C-related kinase PRKSD - Suberites...    88   1e-16
(Q16513) RecName: Full=Serine/threonine-protein kinase N2;      ...    87   2e-16
AK300304_1(AK300304|pid:none) Homo sapiens cDNA FLJ61394 complet...    87   2e-16

 psg: 0.76  gvh: 0.62  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.04
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for SSD274 is nuc

>SSD274Z.Seq
----------GTAGATCATTCGATAATACACCACCAAATTTCAATTCATTCCTAAGAAAT
CCTCATAGTTCCTATACTTCCTATATTGGTACTCCACAATATATGGCAGTTGAGGTGGTT
CAAGGTGTAAATTATTCAAAACTTTGTGATTTTTGGTCATTGGGTGCTATCCTTTTCGAA
TTGGTAACTGGTCAAGCTTTATTTGTTGAATCACCAGATACAACCGAACAAAAGATTAGA
GAAAACATTGGTAATTGGAGAGGTCTTTTAAATACTGCAGTACAAAAGAATCAACCAATG
TCAAAACAAGCTGAATCTTTAATTAGAGAATGTATTGCTCCAGAACGTAAACGTCCTGAT
GCTTCAACCATTAAAAAACATCCATTCTTTGAAGGTATTAATTGGGAAGAAATGGCAAAT
TTCAATGTTGAACCACCTTTTAAACCAACTTTATCAAGTGATGATGATATTTCTTATTTT
ACAAATTAAATTAAAAAATCAAAAAA