>SSD273 (SSD273Q) /CSM/SS/SSD2-D/SSD273Q.Seq.d/
AAAAGTTAAAAAAAAAAGAAAAAAAAAATGACAATTTTATCTGCTATTACCTCAATTTCA
AGACCAAATAAAATTAGTAAATCAGTTGTTTCATCTAATGGTGGTGCTTCATTATCAATG
GGTTCCAACTCAGTTGCATGTGGTGGTTGTGGTGGTGGCTCAAGTGTTTTAATTGCTGCT
GGTGGTTCAGGTGGTTTGTTTGTTGGTGCTTCAGTTGCTGTTGATCTTAGTATTCATGCT
TCTGTCGGAATTGCAATTGGTAGTACTTCATGCCATTGTAATTAATTAAATTAATTATTT
AATTCAAAAAAAAATTAACAAAATATATCATTGTAAATAAATAANAAAAATATTATATTT
TGTTTGTATTAAAAAAA

ks*KKKKKKMTILSAITSISRPNKISKSVVSSNGGASLSMGSNSVACGGCGGGSSVLIAA
GGSGGLFVGASVAVDLSIHASVGIAIGSTSCHCN*ln*lfnskkn*qnisl*inxkniif
cly*k

Frame A:
ks*KKKKKKMTILSAITSISRPNKISKSVVSSNGGASLSMGSNSVACGGCGGGSSVLIAA
GGSGGLFVGASVAVDLSIHASVGIAIGSTSCHCN*ln*lfnskkn*qnisl*inxkniif
cly*k


Frame B:
kvkkkrkkk*qfylllpqfqdqiklvnqlfhlmvvlhyqwvptqlhvvvvvvaqvf*lll
vvqvvcllvlqlllilvfmllselqlvvlhaivin*inyliqkkinkiyhck*ixkilyf
vcikk


Frame C:
klkkkekkndnficyylnfktk*n**iscfi*wwcfiingfqlscmwwlwwwlkcfnccw
wfrwfvcwcfscc*s*yscfcrncnw*yfmpl*liklii*fkkkltkyiivnk*xkyyil
fvlkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD273 (SSD273Q) /CSM/SS/SSD2-D/SSD273Q.Seq.d/                        618   e-176
SSM312 (SSM312Q) /CSM/SS/SSM3-A/SSM312Q.Seq.d/                        611   e-174
SSC746 (SSC746Q) /CSM/SS/SSC7-B/SSC746Q.Seq.d/                        595   e-169
SHB344 (SHB344Q) /CSM/SH/SHB3-B/SHB344Q.Seq.d/                        553   e-157
CHJ423 (CHJ423Q) /CSM/CH/CHJ4-A/CHJ423Q.Seq.d/                        476   e-133
SSL296 (SSL296Q) /CSM/SS/SSL2-D/SSL296Q.Seq.d/                        147   1e-34
SSJ882 (SSJ882Q) /CSM/SS/SSJ8-D/SSJ882Q.Seq.d/                        147   1e-34
SSK638 (SSK638Q) /CSM/SS/SSK6-B/SSK638Q.Seq.d/                        141   9e-33
SSF563 (SSF563Q) /CSM/SS/SSF5-C/SSF563Q.Seq.d/                        141   9e-33
SSM184 (SSM184Q) /CSM/SS/SSM1-D/SSM184Q.Seq.d/                        139   3e-32

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   117  1e-18  8
L31790|L31790.1 Drosophila melanogaster (P1 DS00846 (D02)) DNA sequence, complete sequence.    40  0.002  5
M64570|M64570.1 Vaccinia virus cDNA of the 5' end of the 5' polyadenylated late RNA transcribed from the DNA resolution sequences at the terminal hairpin loop region of the viral DNA.    32  0.004  3
M64569|M64569.1 Vaccinia virus cDNA of the 5' end of the 5' polyadenylated late RNA transcribed from the DNA resolution sequences at the terminal hairpin loop region of the viral DNA.    32  0.005  3
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    46  0.007  6
AC095018|AC095018.1 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone BACR24L18, complete sequence.    40  0.008  6
M64589|M64589.1 Vaccinia virus XbaI-site-bounded symmetrical nucleotide sequence containing the junction between two genomes.    32  0.011  3
M14004|M14004.1 Vaccinia virus telomere.                          32  0.013  3
M29271|M29271.1 Vaccinia virus concatemer junction.               32  0.014  3
BZ487811|BZ487811.1 BONJT35TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONJT35, DNA sequence.    50  0.020  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54BX6) RecName: Full=HssA/B-like protein 62;                        123   2e-27
(Q54SP7) RecName: Full=HssA/B-like protein 56;                         61   1e-08
(Q86K56) RecName: Full=HssA/B-like protein 28;  &AC116977_55(AC1...    61   1e-08
(Q54BX4) RecName: Full=Protein hssA; AltName: Full=NK20;               58   9e-08
(Q54SP8) RecName: Full=HssA/B-like protein 55;                         58   9e-08
(Q54SP5) RecName: Full=HssA/B-like protein 58;                         57   2e-07
(Q86KU0) RecName: Full=HssA/B-like protein 29;  &AC115612_15(AC1...    41   0.011
AE014297_4367(AE014297|pid:none) Drosophila melanogaster chromos...    41   0.015
AY119485_1(AY119485|pid:none) Drosophila melanogaster GH07623 fu...    41   0.015
(Q55FV2) RecName: Full=HssA/B-like protein 2;                          41   0.015

 psg: 0.93  gvh: 0.45  alm: 0.33  top: 0.27  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSD273 is cyt

>SSD273E.Seq
AAAAGTTAAAAAAAAAAGAAAAAAAAAATGACAATTTTATCTGCTATTACCTCAATTTCA
AGACCAAATAAAATTAGTAAATCAGTTGTTTCATCTAATGGTGGTGCTTCATTATCAATG
GGTTCCAACTCAGTTGCATGTGGTGGTTGTGGTGGTGGCTCAAGTGTTTTAATTGCTGCT
GGTGGTTCAGGTGGTTTGTTTGTTGGTGCTTCAGTTGCTGTTGATCTTAGTATTCATGCT
TCTGTCGGAATTGCAATTGGTAGTACTTCATGCCATTGTAATTAATTAAATTAATTATTT
AATTCAAAAAAAAATTAACAAAATATATCATTGTAAATAAATAANAAAAATATTATATTT
TGTTTGTATTAAAAAAA