>SSD258 (SSD258Q) /CSM/SS/SSD2-C/SSD258Q.Seq.d/
XXXXXXXXXXGAAAAAGAACTTGATAAATTGTGTAATATGGTTTCTCCACGTTATAAACC
AACATGTGATAGCATTGTTTCTGTATACACAACTGAAATTATACAATTAATTTTAAATAA
AGAAACACCGGATTTAATTTGTAAAGAGATAAAAGTATGTACAACTGAATGGGAAATTAA
TACAACAAAATTATTTTCAAAAATTACTGAAATTGCCATGAAAGAAATTCATTCAGTAGC
TCAAAAATCAAAATCACATCAATTAACTCAAAATAATTTAAGATCTACAAGTGAGTGTGA
AATTTGTCAAGTATTTGTTAGTAAATTGGAATCATATATTTCAACAAATAAATCACAAGA
AGAAATAATGGAAGAATTAGATAATGCCTGTGATTATATGAAGAGTTTTGAANNACAATG
TAAACAAATGGTTCAAGATTATGTCCCAGAATTAATTGAAATCATGTCCACTACTGAAGA
CCCTAATAAAGTTTGTTCCCAAATTTCCTTATGTCCAAATGACCTATCTTCTAAAAATGA
ATCAAAAAATCAAAGACTTTTAAAAAAAAACATAATCAATTAATAAATTATTAATTTCTA
ATTTCTGA

---KELDKLCNMVSPRYKPTCDSIVSVYTTEIIQLILNKETPDLICKEIKVCTTEWEINT
TKLFSKITEIAMKEIHSVAQKSKSHQLTQNNLRSTSECEICQVFVSKLESYISTNKSQEE
IMEELDNACDYMKSFEXQCKQMVQDYVPELIEIMSTTEDPNKVCSQISLCPNDLSSKNES
KNQRLLKKNIIN**iinf*fl

Frame A:
---kknlincviwflhvinqhvialflytqlklyn*f*ikkhri*fvkr*kyvqlngkli
qqnyfqkllklp*kkfiq*lknqnhin*lkii*dlqvsvkfvkyllvnwnhifqqinhkk
k*wkn*impvii*rvlxxnvnkwfkimsqn*lkscpllktlikfvpkfpyvqmtyllkmn
qkikdf*kkt*sinkllisnf*


Frame B:
---krt**iv*ygfstl*tnm**hcfcihn*nytinfk*rntgfnl*rdksmyn*mgn*y
nkiifkny*nchernsfssskikitsinsk*fkiyk*v*nlssic**igiiyfnk*itrr
nngrir*cl*lyeef*xtm*tngsrlcprin*nhvhy*rp**slfpnflmsk*pif*k*i
kksktfkkkhnqliny*flis


Frame C:
---KELDKLCNMVSPRYKPTCDSIVSVYTTEIIQLILNKETPDLICKEIKVCTTEWEINT
TKLFSKITEIAMKEIHSVAQKSKSHQLTQNNLRSTSECEICQVFVSKLESYISTNKSQEE
IMEELDNACDYMKSFEXQCKQMVQDYVPELIEIMSTTEDPNKVCSQISLCPNDLSSKNES
KNQRLLKKNIIN**iinf*fl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL531 (SSL531Q) /CSM/SS/SSL5-B/SSL531Q.Seq.d/                       1120   0.0
SSE882 (SSE882Q) /CSM/SS/SSE8-D/SSE882Q.Seq.d/                       1120   0.0
SSE760 (SSE760Q) /CSM/SS/SSE7-C/SSE760Q.Seq.d/                       1120   0.0
SSD258 (SSD258Q) /CSM/SS/SSD2-C/SSD258Q.Seq.d/                       1120   0.0
SSF545 (SSF545Q) /CSM/SS/SSF5-B/SSF545Q.Seq.d/                       1116   0.0
SSF304 (SSF304Q) /CSM/SS/SSF3-A/SSF304Q.Seq.d/                       1092   0.0
CHG343 (CHG343Q) /CSM/CH/CHG3-B/CHG343Q.Seq.d/                       1086   0.0
SSL895 (SSL895Q) /CSM/SS/SSL8-D/SSL895Q.Seq.d/                       1025   0.0
SSA866 (SSA866Q) /CSM/SS/SSA8-C/SSA866Q.Seq.d/                        967   0.0
SSC184 (SSC184Q) /CSM/SS/SSC1-D/SSC184Q.Seq.d/                        918   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34  0.001  9
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.            36  0.003  10
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34  0.004  9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40  0.007  12
AC008130|AC008130.5 Homo sapiens chromosome 4, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.    44  0.019  5
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34  0.031  9
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    36  0.032  9
AC117202|AC117202.2 Mus musculus chromosome 14 clone RP23-248L5, complete sequence.    38  0.033  7
BI501534|BI501534.1 rm01f04.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5', mRNA sequence.    34  0.048  3
AX344551|AX344551.1 Sequence 2 from Patent WO0200932.             34  0.059  11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v...    83   7e-15
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (...    83   7e-15
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1...    83   7e-15
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ...    83   7e-15
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains:   Rec...    83   7e-15
M60257_1(M60257|pid:none) Human mutant cerebroside sulfate activ...    83   7e-15
X57108_1(X57108|pid:none) Human gene for cerebroside sulfate act...    83   7e-15
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c...    83   7e-15
CR861144_1(CR861144|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1...    82   1e-14
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet...    81   2e-14

 psg: 0.69  gvh: 0.27  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSD258 is cyt

>SSD258Z.Seq
----------GAAAAAGAACTTGATAAATTGTGTAATATGGTTTCTCCACGTTATAAACC
AACATGTGATAGCATTGTTTCTGTATACACAACTGAAATTATACAATTAATTTTAAATAA
AGAAACACCGGATTTAATTTGTAAAGAGATAAAAGTATGTACAACTGAATGGGAAATTAA
TACAACAAAATTATTTTCAAAAATTACTGAAATTGCCATGAAAGAAATTCATTCAGTAGC
TCAAAAATCAAAATCACATCAATTAACTCAAAATAATTTAAGATCTACAAGTGAGTGTGA
AATTTGTCAAGTATTTGTTAGTAAATTGGAATCATATATTTCAACAAATAAATCACAAGA
AGAAATAATGGAAGAATTAGATAATGCCTGTGATTATATGAAGAGTTTTGAANNACAATG
TAAACAAATGGTTCAAGATTATGTCCCAGAATTAATTGAAATCATGTCCACTACTGAAGA
CCCTAATAAAGTTTGTTCCCAAATTTCCTTATGTCCAAATGACCTATCTTCTAAAAATGA
ATCAAAAAATCAAAGACTTTTAAAAAAAAACATAATCAATTAATAAATTATTAATTTCTA
ATTTCTGA