>SSD253 (SSD253Q) /CSM/SS/SSD2-C/SSD253Q.Seq.d/
XXXXXXXXXXGCTATTGAGGCTTCCCATAATAGTTTCCNACTTTACACTGCCGGGGTTTA
CTAAGAACCAGCTTGTTCTTCTGAAGATTTAGATCATGGGGTACTTGCTGTTGGTATGGG
TACTGATAATGGGGAAGATTATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTT
AAATGGTTATATTCATATGGCAAGAAATAAAGATAACAATTGGGGAATCTCAACAATGGC
TTCATATCCTATTGCTTAACCNTTTTTATATGTTTGGGTATATATATATATAAATACTCT
TCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTT
ATTCTTTTTTAAAAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAA
TTTCTTATTCAATTTTCCTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

---ieashnsfxlytagvy*EPACSSEDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLN
GYIHMARNKDNNWGISTMASYPIA*pflyvwvyiyintlqtcinlyilylfffffffclf
ffkkkkkkkqiiikii*inflfnfpklkkkkkkkkkkkkk

Frame A:
---llrlpiivsxftlpgftknqlvllki*imgylllvwvlimgkiitllkivgdhhgv*
mvifiwqeikitigesqqwlhilllnxfymfgyiyi*ilfkpv*iciffifffsfffsvy
sflkkkkkknkl*lk*fk*isysifln*kkkkkkkkkkkk


Frame B:
---y*gfp**fptlhcrgllrtslff*rfrswgtccwygy**wgrllhc*k*lgtimgfk
wlysygkk*r*qlgnlnngfisycltxficlgiyiykyssnlykfvyslsffflffflfi
lf*kkkkkktnyn*nnlnkfliqfs*ikkkkkkkkkkkkk


Frame C:
---ieashnsfxlytagvy*EPACSSEDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLN
GYIHMARNKDNNWGISTMASYPIA*pflyvwvyiyintlqtcinlyilylfffffffclf
ffkkkkkkkqiiikii*inflfnfpklkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD253 (SSD253Q) /CSM/SS/SSD2-C/SSD253Q.Seq.d/                        519   e-146
SSM529 (SSM529Q) /CSM/SS/SSM5-B/SSM529Q.Seq.d/                        454   e-127
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/                        454   e-127
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/                        454   e-127
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/                        454   e-127
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/                        454   e-127
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/                        454   e-127
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/                        454   e-127
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/                        454   e-127
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/                        454   e-127

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB272018|CB272018.1 taa29f12.x2 Hydra EST -II Hydra magnipapillata cDNA 3' similar to TR:O96086 O96086 CATHEPSIN L-LIKE TICK CYSTEINE PROTEINASE B. ;, mRNA sequence.    44  0.010  2
AC142066|AC142066.2 Rattus norvegicus clone CH230-198P20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  1.6  1
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    44  1.6  1
AI078878|AI078878.1 Tc-EST-013 (3' read) Toxocara canis infective larva cDNA library Toxocara canis cDNA 3' similar to Tc-cpl-1, cathepsin L cysteine protease, mRNA sequence.    44  1.6  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    44  1.6  1
U53172|U53172.1 Toxocara canis cathepsin L-like cysteine proteinase mRNA, complete cds.    44  1.6  1
AC097252|AC097252.7 Rattus norvegicus clone CH230-155I3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  3.8  2
AC110904|AC110904.3 Mus musculus clone RP24-174I24, WORKING DRAFT SEQUENCE, 6 ordered pieces.    38  4.1  3
AC016358|AC016358.3 Homo sapiens chromosome 4 clone RP11-671B14 map 4, WORKING DRAFT SEQUENCE, 15 unordered pieces.    42  6.2  1
BH158875|BH158875.1 ENTTG39TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  6.2  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...   126   2e-28
EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...   125   4e-28
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p...   124   1e-27
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...   122   5e-27
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   120   1e-26
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   119   3e-26
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   119   5e-26
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik...   119   5e-26
EZ000236_1(EZ000236|pid:none) TSA: Amblyomma americanum Contig61...   117   1e-25
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   117   2e-25

 psg: 0.75  gvh: 0.38  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSD253 is cyt

>SSD253Z.Seq
----------GCTATTGAGGCTTCCCATAATAGTTTCCNACTTTACACTGCCGGGGTTTA
CTAAGAACCAGCTTGTTCTTCTGAAGATTTAGATCATGGGGTACTTGCTGTTGGTATGGG
TACTGATAATGGGGAAGATTATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTT
AAATGGTTATATTCATATGGCAAGAAATAAAGATAACAATTGGGGAATCTCAACAATGGC
TTCATATCCTATTGCTTAACCNTTTTTATATGTTTGGGTATATATATATATAAATACTCT
TCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTT
ATTCTTTTTTAAAAAAAAAAAAAAAAAAAAACAAATTATAATTAAAATAATTTAAATAAA
TTTCTTATTCAATTTTCCTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA