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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD242
Library SS
(Link to library)
Clone ID SSD242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID SSD242E
(Link to Original site)
Representative DNA sequence 
>SSD242 (SSD242Q) /CSM/SS/SSD2-B/SSD242Q.Seq.d/
GTATTGTAATACCATCAAAATGGGTAACTGCAAAATTAATAGATCTAAGTCCAGATGATC
AAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATTCTA
ATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTG
GTGGTGGTAGTGAATATGATAACAAATATAAAAAAAAACAACAACATGATGAAAAAGATA
ATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTG
TAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAA
AGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTG
GCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTA
TTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTG
AAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAAC
CAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATGCAAAATTTATT
GGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTATACCAACTTCA
ACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAA
GAAAATAATAAAAAAAATAAAG
sequence update 1999. 4. 5
Translated Amino Acid sequence 
IVIPSKWVTAKLIDLSPDDQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSG
GGSEYDNKYKKKQQHDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEK
EREKQDYEIICNIEPIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIE
KGTVSFSDDKRLECNSVPEPGYSESSLIFSKSDAKCKIYWFGKVTIYD*sk*illytnfn
nfnld*ssfkkefnqyfflrk**kk*
Translated Amino Acid sequence (All Frames) 
Frame A:
vl*yhqng*lqn**i*vqmikli*ly*kllimiqfii*iliiivlvvvvvlivknq*kvv
vvvvnmitnikknnnmmkkimkqvvvvtimmmki*iktil*ivvnlhhhhliiii*mn*k
rkernkimksfvilnqlnslakmkdywvkilfyvvfqrnvliyhyvkn*r*rliqfihpl
kreqyhflminv*nvtlyqnqvtlnph*sfqslmqnakfiglvksqymtnpnkyycipts
tiltwisqvskknsinisf*ennkknk


Frame B:
ycntikmgnckinrsksr*sn*fsfirny*l*fnssfkf****y***w*y***rinkk*w
ww**i**qi*kkttt**kr**skw***q****kfk*kpyck***iyitii*lssfr*irk
gkretrl*nhl*y*tn*ihwpk*riig*ryyfmwfskgty*fitmsrikdkg*yslsih*
kgnsiif***tfrm*lctrtrll*ilinlfkv*ckmqnllvw*shni*liqiniivyqlq
qf*lglvkfqkriqsiflfkkiikkik


Frame C:
IVIPSKWVTAKLIDLSPDDQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSG
GGSEYDNKYKKKQQHDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEK
EREKQDYEIICNIEPIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIE
KGTVSFSDDKRLECNSVPEPGYSESSLIFSKSDAKCKIYWFGKVTIYD*sk*illytnfn
nfnld*ssfkkefnqyfflrk**kk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD242 (SSD242Q) /CSM/SS/SSD2-B/SSD242Q.Seq.d/                       1511   0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/                       1419   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1320   0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1320   0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1320   0.0
CFI603 (CFI603Q) /CSM/CF/CFI6-A/CFI603Q.Seq.d/                       1281   0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/                       1255   0.0
CFF509 (CFF509Q) /CSM/CF/CFF5-A/CFF509Q.Seq.d/                       1253   0.0
AFK472 (AFK472Q) /CSM/AF/AFK4-C/AFK472Q.Seq.d/                       1245   0.0
AFI195 (AFI195Q) /CSM/AF/AFI1-D/AFI195Q.Seq.d/                       1243   0.0
own update 2005. 1. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    48  1e-08  11
BX157914|BX157914.1 Danio rerio genomic clone DKEY-125H19, genomic survey sequence.    48  3e-06  3
AC109011|AC109011.4 Rattus norvegicus clone CH230-63A23, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    64  3e-06  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44  4e-06  13
BZ809665|BZ809665.1 PUGAP44TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa324H16, DNA sequence.    60  6e-06  2
AC131143|AC131143.2 Rattus norvegicus clone CH230-76E20, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    50  2e-05  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42  2e-05  14
BX511085|BX511085.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-273I10.    56  2e-05  4
AC110828|AC110828.4 Rattus norvegicus clone CH230-213F24, *** SEQUENCING IN PROGRESS ***, 89 unordered pieces.    64  2e-05  3
AC115681|AC115681.2 Dictyostelium discoideum chromosome 2 map 6097680-6105897 strain AX4, complete sequence.    44  3e-05  4
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM285328_3(AM285328|pid:none) Spiroplasma citri GII3-3X chromoso...    34   4.9
AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    34   6.3
(P95994) RecName: Full=UPF0103 protein SSO0066;  &AE006641_61(AE...    34   6.3
AY666015_90(AY666015|pid:none) Grouper iridovirus, complete geno...    33   8.2
AY521625_162(AY521625|pid:none) Singapore grouper iridovirus, co...    33   8.2
protein update 2009. 7. 6
PSORT 

 psg: 0.56  gvh: 0.31  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSD242 is nuc
5' end seq. ID SSD242F
5' end seq. 
>SSD242F.Seq
GTATTGTAATACCATCAAAATGGGTAACTGCAAAATTAATAGATCTAAGTCCAGATGATC
AAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATTCTA
ATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTG
GTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAAAAG
ATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATA
TTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAG
AAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCA
TTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAAC
GTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCA
TTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAG
AACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAA----------
Length of 5' end seq. 649
3' end seq. ID SSD242Z
3' end seq. 
>SSD242Z.Seq
----------AAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAAC
AATAATGATGATGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCA
CCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTAT
GAAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGT
AAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAA
TTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCT
GATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTA
ATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAAT
CCAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCA
AAAAAGAATTCAATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAAGACATTGTG
A
Length of 3' end seq. 591
Connected seq. ID SSD242P
Connected seq. 
>SSD242P.Seq
GTATTGTAATACCATCAAAATGGGTAACTGCAAAATTAATAGATCTAAGTCCAGATGATC
AAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATTCTA
ATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTG
GTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAAAAG
ATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATA
TTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAG
AAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCA
TTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAAC
GTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCA
TTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAG
AACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAA----------A
AAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGA
TGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGA
TTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTG
TAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTAT
TTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAA
GGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACG
TTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAA
GTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATA
TTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTC
AATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAAGACATTGTGA
Length of connected seq. 1240
Full length Seq ID SSD242E
Full length Seq. 
>SSD242E.Seq
GTATTGTAATACCATCAAAATGGGTAACTGCAAAATTAATAGATCTAAGTCCAGATGATC
AAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATTCTA
ATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTG
GTGGTGGTAGTGAATATGATAACAAATATAAAAAAAAACAACAACATGATGAAAAAGATA
ATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTG
TAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAA
AGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTG
GCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTA
TTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTG
AAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAAC
CAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATGCAAAATTTATT
GGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTATACCAACTTCA
ACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAA
GAAAATAATAAAAAAAATAAAG
Length of full length seq. 802