>SSD241 (SSD241Q) /CSM/SS/SSD2-B/SSD241Q.Seq.d/
XXXXXXXXXXTTTGCGAAGAGAATGATATAGCATTAATCGTTTCCGATGGTGTTCATGAT
AATTTGGCTCCAATAATGTTAGGTAAAACGCCTGATGAAGTAAACATTGACGCTAAAGGT
TGGGAAGATCTTCCTCAAGATGATTTATTACGTGCTAAAACTCAATTCATGAAATCATTA
CTCGAAGAAATGATCTTTAATAATCCTGATGAAAAAATTTCTCCAACTGATATCACAAAT
AAAATTATTGATCATTGTTCAACTGTTACTAAAAATGCTAGAGAATTTATGCAAGAGTTC
CCAAATAAAAAACAACCAAATGATTATAGAGAATATCCAGGTAAAATGGATCATACCACT
GTAGTTGCATATAAGATTGGTTCTGGAAATTCATCATCATTTTAAAAAAAAAAAAATAAT
AATAAAAAAAAAAAAGATTTAAATAACACACAACCAAAGAAGAGAAAGAAGAATAAAAAA
AAAAAAATAAAAAAAAATACAAAAAAATACAAAAAAAAGAAATACAAAAAAAAAATAAAA
AAAAGATTTTTAA

---CEENDIALIVSDGVHDNLAPIMLGKTPDEVNIDAKGWEDLPQDDLLRAKTQFMKSLL
EEMIFNNPDEKISPTDITNKIIDHCSTVTKNAREFMQEFPNKKQPNDYREYPGKMDHTTV
VAYKIGSGNSSSF*kkknnnkkkkdlnntqpkkrkknkkkkikkntkkykkkkykkkikk
rfl

Frame A:
---lrre*ysinrfrwcs**fgsnnvr*na**skh*r*rlgrsssr*fitc*nsiheiit
rrndl**s**knfsn*yhk*ny*slfncy*kc*riyarvpk*kttk*l*risr*ngsyhc
sci*dwfwkfiiilkkkk***kkkrfk*httkeekee*kkknkkkykkiqkkeiqkknkk
kif


Frame B:
---CEENDIALIVSDGVHDNLAPIMLGKTPDEVNIDAKGWEDLPQDDLLRAKTQFMKSLL
EEMIFNNPDEKISPTDITNKIIDHCSTVTKNAREFMQEFPNKKQPNDYREYPGKMDHTTV
VAYKIGSGNSSSF*kkknnnkkkkdlnntqpkkrkknkkkkikkntkkykkkkykkkikk
rfl


Frame C:
---akrmi*h*sfpmvfmiiwlq*c*vkrlmk*tltlkvgkiflkmiyyvlklns*nhys
kk*sliilmkkflqlisqiklliivqlllkmlenlckssqiknnqmiieniqvkwiipl*
lhirlvleihhhfkkkkiiikkkki*ithnqrrerrikkkk*kkiqkntkkrntkkk*kk
df*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD241 (SSD241Q) /CSM/SS/SSD2-B/SSD241Q.Seq.d/                        779   0.0
SLI447 (SLI447Q) /CSM/SL/SLI4-B/SLI447Q.Seq.d/                        771   0.0
VSA619 (VSA619Q) /CSM/VS/VSA6-A/VSA619Q.Seq.d/                        749   0.0
CHA709 (CHA709Q) /CSM/CH/CHA7-A/CHA709Q.Seq.d/                        682   0.0
SSA810 (SSA810Q) /CSM/SS/SSA8-A/SSA810Q.Seq.d/                        664   0.0
SLE624 (SLE624Q) /CSM/SL/SLE6-A/SLE624Q.Seq.d/                        575   e-163
VFE507 (VFE507Q) /CSM/VF/VFE5-A/VFE507Q.Seq.d/                        553   e-156
AFF585 (AFF585Q) /CSM/AF/AFF5-D/AFF585Q.Seq.d/                        523   e-148
SLI155 (SLI155Q) /CSM/SL/SLI1-C/SLI155Q.Seq.d/                        406   e-112
SLF548 (SLF548Q) /CSM/SL/SLF5-B/SLF548Q.Seq.d/                        339   3e-92

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    42  0.001  2
AC122816|AC122816.3 Mus musculus chromosome UNK clone RP23-235N10, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  0.71  3
AX508739|AX508739.1 Sequence 3434 from Patent WO0216655.          42  0.94  2
AC010785|AC010785.8 Homo sapiens, clone RP11-6O24, complete sequence.    38  1.5  4
BF695584|BF695584.1 601852502F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE:4076112 5', mRNA sequence.    44  1.8  1
AL390782|AL390782.5 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-220P17.    38  2.1  3
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    42  2.4  3
AC118913|AC118913.8 Rattus norvegicus clone CH230-70P13, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46  4.7  2
BZ772064|BZ772064.1 mct84e10.b1 HFOSMID004 Homo sapiens genomic, DNA sequence.    36  5.5  2
U67836|U67836.1 Dictyostelium discoideum TipA (tipA) gene, complete cds.    34  5.7  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q10178) RecName: Full=U2 snRNP component prp10;  &CU329670_1789...    36   0.57
(A7MLI3) RecName: Full=Zinc transport protein zntB;  &CP000783_1...    34   2.2
FM992693_340(FM992693|pid:none) Candida dubliniensis CD36 chromo...    34   2.8
AP009552_1494(AP009552|pid:none) Microcystis aeruginosa NIES-843...    34   2.8
AY810796_1(AY810796|pid:none) Schistosoma japonicum SJCHGC04347 ...    34   2.8
AB450779_1(AB450779|pid:none) Nocardia crassostreae gyrB gene fo...    34   2.8
AM263198_2295(AM263198|pid:none) Listeria welshimeri serovar 6b ...    33   3.7
(A4WAT9) RecName: Full=Zinc transport protein zntB;  &CP000653_2...    33   3.7
EF392845_1(EF392845|pid:none) Salicornia veneta photosynthetic o...    33   4.8
CP001357_947(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    33   4.8

 psg: 0.75  gvh: 0.29  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSD241 is cyt

>SSD241Z.Seq
----------TTTGCGAAGAGAATGATATAGCATTAATCGTTTCCGATGGTGTTCATGAT
AATTTGGCTCCAATAATGTTAGGTAAAACGCCTGATGAAGTAAACATTGACGCTAAAGGT
TGGGAAGATCTTCCTCAAGATGATTTATTACGTGCTAAAACTCAATTCATGAAATCATTA
CTCGAAGAAATGATCTTTAATAATCCTGATGAAAAAATTTCTCCAACTGATATCACAAAT
AAAATTATTGATCATTGTTCAACTGTTACTAAAAATGCTAGAGAATTTATGCAAGAGTTC
CCAAATAAAAAACAACCAAATGATTATAGAGAATATCCAGGTAAAATGGATCATACCACT
GTAGTTGCATATAAGATTGGTTCTGGAAATTCATCATCATTTTAAAAAAAAAAAAATAAT
AATAAAAAAAAAAAAGATTTAAATAACACACAACCAAAGAAGAGAAAGAAGAATAAAAAA
AAAAAAATAAAAAAAAATACAAAAAAATACAAAAAAAAGAAATACAAAAAAAAAATAAAA
AAAAGATTTTTAA