SSD236
Library SS
(Link to library)
Clone ID SSD236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSD236Z
(Link to Original site)
Representative DNA sequence
>SSD236 (SSD236Q) /CSM/SS/SSD2-B/SSD236Q.Seq.d/
XXXXXXXXXXAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCCAAAA
AAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTTCATGTAATGG
GTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATTCTTGACCCAG
ATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAG
AAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGT
CTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTAAATTCCTCAT
GATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAG
TTTTTATAAAAAAAA
sequence update 1997. 9.22
Translated Amino Acid sequence
---THGDHNDFIFKLTDSKKIQMARDILSGKESNEVHVMGRIKKRPESYNPKFSFILDPD
TITFFAMAIEVCDASTIYVEDHLDEACGAFLPGCFWCPWSSKLTREIKV*tirvklnss*
lnliklnt*ifnnkvy*tkvfikk


Translated Amino Acid sequence (All Frames)
Frame A:
---THGDHNDFIFKLTDSKKIQMARDILSGKESNEVHVMGRIKKRPESYNPKFSFILDPD
TITFFAMAIEVCDASTIYVEDHLDEACGAFLPGCFWCPWSSKLTREIKV*tirvklnss*
lnliklnt*ifnnkvy*tkvfikk


Frame B:
---pmvtimilfsn*qipkkfkwpeifclerkamkfm*wvelkrdlkaiiqsfplfltqi
qshflpwllkfvmlqlfm*kitlmrpvvlssqvasgahglqn*qeklkfkl*e*n*iphd
*i*sn*ilkyliikfikqkfl*kk


Frame C:
---pw*p**fyfqinrfqknsngqryfvwkgkq*sscng*n*ket*kl*skvflys*pry
nhifchgy*sl*cfnylcrrsp**glwcfpprlllvpmvfkinkrn*slnykskikflmi
kfnqikylni***sllnksfykk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD236 (SSD236Q) /CSM/SS/SSD2-B/SSD236Q.Seq.d/ 654 0.0
SSM185 (SSM185Q) /CSM/SS/SSM1-D/SSM185Q.Seq.d/ 646 0.0
SSM130 (SSM130Q) /CSM/SS/SSM1-B/SSM130Q.Seq.d/ 646 0.0
SSK794 (SSK794Q) /CSM/SS/SSK7-D/SSK794Q.Seq.d/ 646 0.0
SSK457 (SSK457Q) /CSM/SS/SSK4-C/SSK457Q.Seq.d/ 646 0.0
SSK367 (SSK367Q) /CSM/SS/SSK3-C/SSK367Q.Seq.d/ 646 0.0
SSK206 (SSK206Q) /CSM/SS/SSK2-A/SSK206Q.Seq.d/ 646 0.0
SSJ696 (SSJ696Q) /CSM/SS/SSJ6-D/SSJ696Q.Seq.d/ 646 0.0
SSJ576 (SSJ576Q) /CSM/SS/SSJ5-D/SSJ576Q.Seq.d/ 646 0.0
SSJ555 (SSJ555Q) /CSM/SS/SSJ5-C/SSJ555Q.Seq.d/ 646 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds. 583 0.0 3
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 149 2e-76 7
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 56 0.004 4
AL138641|AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. 38 0.41 7
AC139806|AC139806.1 Homo sapiens chromosome 5 clone RP11-1357D4, WORKING DRAFT SEQUENCE, 7 unordered pieces. 36 1.2 4
AC140506|AC140506.1 Homo sapiens chromosome 5 clone RP11-1103B23, WORKING DRAFT SEQUENCE, 44 unordered pieces. 44 1.4 1
AC136678|AC136678.2 Rattus norvegicus clone CH230-16I19, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 1.4 1
AC101966|AC101966.3 Mus musculus clone RP24-240M1, WORKING DRAFT SEQUENCE, 8 unordered pieces. 44 1.4 1
AC139786|AC139786.1 Homo sapiens chromosome 5 clone RP11-1122B10, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 1.4 1
AC096079|AC096079.6 Rattus norvegicus clone CH230-33I23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 44 1.4 1
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ... 226 2e-58
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 142 4e-33
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 126 2e-28
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom... 46 3e-04
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 40 0.025
CP000159_1985(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 32 5.2
AY953261_1(AY953261|pid:none) Plum pox virus strain D isolate Cd... 32 6.8
EF611243_1(EF611243|pid:none) Plum pox virus isolate Penn3 polyp... 32 6.8
AY917135_1(AY917135|pid:none) Plum pox virus strain M isolate IS... 32 8.8
(Q84934) RecName: Full=Genome polyprotein; Contains: RecName: ... 32 8.8
protein update 2009. 6.10
PSORT

psg: 0.75 gvh: 0.26 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SSD236 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD236Z
3' end seq.
>SSD236Z.Seq
----------AACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCCAAAA
AAATTCAAATGGCCAGAGATATTTTGTCTGGAAAGGAAAGCAATGAAGTTCATGTAATGG
GTAGAATTAAAAAGAGACCTGAAAGCTATAATCCAAAGTTTTCCTTTATTCTTGACCCAG
ATACAATCACATTTTTTGCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAG
AAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGT
CTTCAAAATTAACAAGAGAAATTAAAGTTTAAACTATAAGAGTAAAATTAAATTCCTCAT
GATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAG
TTTTTATAAAAAAAA
Length of 3' end seq. 425
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -