SSD219
Library SS
(Link to library)
Clone ID SSD219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04789-1
Original site URL
Representative seq. ID SSD219F
(Link to Original site)
Representative DNA sequence
>SSD219 (SSD219Q) /CSM/SS/SSD2-A/SSD219Q.Seq.d/
CTTTGCAATTGTACATACAATACATCAAATAATAAAAAAATGGGCTTTTTCGGATTTATT
GGATCATTAATTGTTTTTTTAATTAAAACACCATTTTTATTGGCATTCTTCTTACTTAAA
TTAATCTTCCACCCAATTTCAATTTTAGTTGGATTAATTGCATTATACTTATATTACACC
AGTGGTGAAAAGAAGGATATTCCTTTCGTTCCAAAATTCGCACCAGCATTCAATCCAAAG
ACAGCAGGTTCTCACAGTGGTACTAAAGGTGCTAAAGGAGTCGTAAAATCAAAACATGGT
TAAATTAAATAATAATAATAATAATAATAAATAATATAATACATCACATCATAATCAACC
TTTCAATCATATTCAAATTCTACACATTATCATTATCATCATATACAAAACCTCAAACCT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTATATAATAATTGTGXXXXXXXXXX
sequence update 1998. 9.10
Translated Amino Acid sequence
LCNCTYNTSNNKKMGFFGFIGSLIVFLIKTPFLLAFFLLKLIFHPISILVGLIALYLYYT
SGEKKDIPFVPKFAPAFNPKTAGSHSGTKGAKGVVKSKHG*ik*******ii*yits*st
fqsysnsthyhyhhiqnlkpkkkkkkkkkkklynnc---


Translated Amino Acid sequence (All Frames)
Frame A:
LCNCTYNTSNNKKMGFFGFIGSLIVFLIKTPFLLAFFLLKLIFHPISILVGLIALYLYYT
SGEKKDIPFVPKFAPAFNPKTAGSHSGTKGAKGVVKSKHG*ik*******ii*yits*st
fqsysnsthyhyhhiqnlkpkkkkkkkkkkklynnc---


Frame B:
faivhtihqiikkwafsdlldh*lff*lkhhfywhssyln*sstqfqf*ld*lhytyitp
vvkrriflsfqnshqhsiqrqqvltvvlkvlkes*nqnmvklnnnnnnnk*yntshhnqp
fnhiqilhiiiiiiyktsnlkkkkkkkkkksyiii---


Frame C:
lqlyiqyik**knglfriywiincffn*ntifigillt*inlppnfnfswinciililhq
w*kegysfrskirtsiqskdsrfsqwy*rc*rsrkiktwln*iiiiiiinniihhiiinl
siifkfytlslssytkpqt*kkkkkkkkkkvi**l---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD219 (SSD219Q) /CSM/SS/SSD2-A/SSD219Q.Seq.d/ 511 e-144
SSC853 (SSC853Q) /CSM/SS/SSC8-C/SSC853Q.Seq.d/ 484 e-136
SSE185 (SSE185Q) /CSM/SS/SSE1-D/SSE185Q.Seq.d/ 444 e-124
VSH347 (VSH347Q) /CSM/VS/VSH3-B/VSH347Q.Seq.d/ 157 2e-37
VSG718 (VSG718Q) /CSM/VS/VSG7-A/VSG718Q.Seq.d/ 145 7e-34
VSF660 (VSF660Q) /CSM/VS/VSF6-C/VSF660Q.Seq.d/ 36 0.47
VHQ456 (VHQ456Q) /CSM/VH/VHQ4-C/VHQ456Q.Seq.d/ 36 0.47
VFO852 (VFO852Q) /CSM/VF/VFO8-C/VFO852Q.Seq.d/ 36 0.47
VFM628 (VFM628Q) /CSM/VF/VFM6-B/VFM628Q.Seq.d/ 36 0.47
VFL616 (VFL616Q) /CSM/VF/VFL6-A/VFL616Q.Seq.d/ 36 0.47

own update 2003.10.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC104974|AC104974.3 Homo sapiens chromosome 17 clone RP11-145L16 map 17, WORKING DRAFT SEQUENCE, 23 ordered pieces. 48 0.099 1
AC105030|AC105030.11 Homo sapiens chromosome 17 clone CTD-2244F11 map 17, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces. 48 0.099 1
AF158710|AF158710.1 Theileria sp. BK115 18S ribosomal RNA gene, partial sequence. 46 0.39 1
L19081|L19081.1 Theileria sp. 18S ribosomal RNA. 46 0.39 1
AC104587|AC104587.1 Homo sapiens chromosome 17 clone RP11-78C17 map 17, LOW-PASS SEQUENCE SAMPLING. 48 1.2 2
BH158852|BH158852.1 ENTQY94TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 1.3 2
BU715901|BU715901.1 SJM2ADG06 SJM Schistosoma japonicum cDNA, mRNA sequence. 36 3.2 2
BH024753|BH024753.1 RPCI-24-335G10.TJ RPCI-24 Mus musculus genomic clone RPCI-24-335G10 , DNA sequence. 38 3.7 2
Z83117|Z83117.1 Caenorhabditis elegans cosmid M04C7. 42 6.1 1
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 42 6.1 1
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF148097_1(EF148097|pid:none) Populus trichocarpa clone WS0127_I... 32 5.5

protein update 2009. 1.28
PSORT

psg: 0.74 gvh: 0.61 alm: 0.21 top: 0.57 tms: 0.13 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

32.0 %: endoplasmic reticulum
24.0 %: plasma membrane
16.0 %: nuclear
8.0 %: vacuolar
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SSD219 is end

5' end seq. ID SSD219F
5' end seq.
>SSD219F.Seq
CTTTGCAATTGTACATACAATACATCAAATAATAAAAAAATGGGCTTTTTCGGATTTATT
GGATCATTAATTGTTTTTTTAATTAAAACACCATTTTTATTGGCATTCTTCTTACTTAAA
TTAATCTTCCACCCAATTTCAATTTTAGTTGGATTAATTGCATTATACTTATATTACACC
AGTGGTGAAAAGAAGGATATTCCTTTCGTTCCAAAATTCGCACCAGCATTCAATCCAAAG
ACAGCAGGTTCTCACAGTGGTACTAAAGGTGCTAAAGGAGTCGTAAAATCAAAACATGGT
TAAATTAAATAATAATAATAATAATAATAAATAATATAATACATCACATCATAATCAACC
TTTCAATCATATTCAAATTCTACACATTATCATTATCATCATATACAAAACCTCAAACCT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTATATAATAATTGTG----------
Length of 5' end seq. 469
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -