SSD206
Library SS
(Link to library)
Clone ID SSD206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSD206Z
(Link to Original site)
Representative DNA sequence
>SSD206 (SSD206Q) /CSM/SS/SSD2-A/SSD206Q.Seq.d/
XXXXXXXXXXAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTC
CTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCNN
TGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTAT
CCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAA
CAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTT
TCAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTATAAAAAAAAGAAAGA
AAAAAAG
sequence update 1997. 9.11
Translated Amino Acid sequence
---nnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFAXHYSPQAQIISSSTNDAPQVS
SGLIHHIPMQLSQMYKQSLTKKNI*kkkkkkkkky*niffkinfkyk**cffffikkrkk
k


Translated Amino Acid sequence (All Frames)
Frame A:
---nnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFAXHYSPQAQIISSSTNDAPQVS
SGLIHHIPMQLSQMYKQSLTKKNI*kkkkkkkkky*niffkinfkyk**cffffikkrkk
k


Frame B:
---iiknkkkikkktfktllllfgasvklmlrclspplxcitllklr*srapltmllkyp
qg*sitflcnslkcissl*qkkifkkkkkrkkknikiffsksilninnnvfffl*kkerk
k


Frame C:
---**kikkk*kkkllklsfyflvllls*c*gvslplcxallssssdnlelh*rcsssil
rvnpshsyatlsnv*avfnkkkylkkkkkekkkilkyffqnqf*i*iimffffykkkkek
k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/ 375 e-103
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/ 375 e-103
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/ 375 e-103
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/ 375 e-103
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/ 375 e-103
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/ 375 e-103
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/ 375 e-103
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/ 375 e-103
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/ 375 e-103
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/ 375 e-103

own update 2004. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16417|D16417.1 Dictyostelium discoideum mRNA. 375 e-118 2
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence. 48 0.075 1
AZ356349|AZ356349.1 1M0097H20F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0097H20 F, DNA sequence. 48 0.075 1
BI745034|BI745034.1 rk95d06.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence. 38 0.12 2
BH008429|BH008429.1 ef15e10.x1 TO1000 Brassica oleracea genomic clone ef15e10 5', DNA sequence. 36 0.12 2
BH999320|BH999320.1 oeh12f10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 36 0.15 2
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 34 0.39 3
AC073491|AC073491.11 Homo sapiens chromosome X clone RP11-107D13, WORKING DRAFT SEQUENCE, 18 unordered pieces. 40 0.81 5
BH246673|BH246673.1 BOGAT90TF BOGA Brassica oleracea genomic clone BOGAT90, DNA sequence. 44 1.2 1
BH954464|BH954464.1 odg91e07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 44 1.2 1
dna update 2003. 7.31
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 224,988,633
protein update 2009. 6.10
PSORT

psg: 0.88 gvh: 0.33 alm: 0.55 top: 0.37 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SSD206 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD206Z
3' end seq.
>SSD206Z.Seq
----------AAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTC
CTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCNN
TGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTAT
CCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAA
CAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTT
TCAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTATAAAAAAAAGAAAGA
AAAAAAG
Length of 3' end seq. 357
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -