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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD204
Library SS
(Link to library)
Clone ID SSD204
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01628-1|Contig-U15575-1
Original site URL
Representative seq. ID SSD204P
(Link to Original site)
Representative DNA sequence 
>SSD204 (SSD204Q) /CSM/SS/SSD2-A/SSD204Q.Seq.d/
GNAGAACATTTAACTTGGTATTTTTTAACAACTTCAGTTATATTACTTCAAATGGCTCCT
CATTCAATTAGTTTATTCTTTTATTTTACAAATTGGATATCATCATATACTACTAATAAT
AGTAATAATAATATTATTAATAATAATAATAATAATAATAATAATAATAATAGTAATAAT
AATAATAATAATAATAATAATAATATTAATAGTAGTACTGGTATTAATAGTTATAATACA
AATCAACAAAATCGTAATACAAAACAACAACAACAATCACTTCAACAAATGTTTATTCTA
TTAGGTATTTTAGTTTGTTTAAGAXXXXXXXXXXCTATTGCTACATAAAGTTCACAATAT
GTCCCTACTCACAATAATGGGTGTTATGCACATTACTACATCTCTACCTCCTGGAGGATA
CTGGAAGACGTGCAAAGAGTGGTATGACTGGTGTTTGTGTTGGTATGATTTGTTTGGGTT
GGTTGGGTCAATTTGGTTATTTCGCATTTGGTAATTCAAATTCTTTAGCAAGTATTGATA
TTTCCGGTAGTTATACTGCTTTGATCGATTATAATCAGTATCTTGTTGGCATTCAAACCT
TGTTAATTGGTTATACTTCTCAATTGTTCTTCTTTTTCGTTTCTTTGGCTTATGTTACCC
ATTTGGCTGTCAAATCCATTAGCAATAGTAATCATCAACAAGAACCCTCATTATTACCAT
CACCTGGAACAAGCTCTGATATCATTGATGAATTACAATGGTATGGTTTAGTTAGTGCAC
TATTGGATTGTGGTATTCGTTGGACAAATATTTTCATCTTTAGTATTTGTATTCTTATTC
AACGTTATCATCTTTTCATTTGGACAGTTTTCTCTCCAAAATATATTTATGAAGTATTGG
ATGTAACTTTGGTTTTAATAAAATCAATCCTATTAGCTGCTTTTATAATTTATCTAAGAT
TATTATCATTTGTAAAAGAAAAACAAGTTGAAAATAATTCATTAGCTTCATCTCAAAATA
TAAATNAAGAAGAATAAAAAAAAAATAAAAAAAACAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
XEHLTWYFLTTSVILLQMAPHSISLFFYFTNWISSYTTNNSNNNIINNNNNNNNNNNSNN
NNNNNNNNINSSTGINSYNTNQQNRNTKQQQQSLQQMFILLGILVCLR---

---LLLHKVHNMSLLTIMGVMHITTSLPPGGYWKTCKEWYDWCLCWYDLFGLVGSIWLFR
IW*fkffsky*yfr*lycfdrl*svscwhsnlvnwlyfsivllfrffglcypfgcqih*q
**sstrtliititwnkl*yh**itmvwfs*ctiglwysldkyfhl*ylysystlssfhld
sflskiyl*sigcnfgfnkinpiscfynlskiiiickrkts*k*fisfiskykxrrikkk
*kkq
Translated Amino Acid sequence (All Frames) 
Frame A:
XEHLTWYFLTTSVILLQMAPHSISLFFYFTNWISSYTTNNSNNNIINNNNNNNNNNNSNN
NNNNNNNNINSSTGINSYNTNQQNRNTKQQQQSLQQMFILLGILVCLR---

---LLLHKVHNMSLLTIMGVMHITTSLPPGGYWKTCKEWYDWCLCWYDLFGLVGSIWLFR
IW*fkffsky*yfr*lycfdrl*svscwhsnlvnwlyfsivllfrffglcypfgcqih*q
**sstrtliititwnkl*yh**itmvwfs*ctiglwysldkyfhl*ylysystlssfhld
sflskiyl*sigcnfgfnkinpiscfynlskiiiickrkts*k*fisfiskykxrrikkk
*kkq

Frame B:
xni*lgif*qlqlyyfkwlliqlvysfilqigyhhilliiviiilliiiiiiiiiiivii
iiiiiiiilivvlvliviiqinkiviqnnnnnhfnkclfy*vf*fv*---

---ycyikfticpysq*wvlctllhlylledtgrraksgmtgvcvgmiclgwlgqfgyfa
fgnsnslasidisgsytalidynqylvgiqtlligytsqlffffvslayvthlavksisn
snhqqepsllpspgtssdiidelqwyglvsalldcgirwtnififsiciliqryhlfiwt
vfspkyiyevldvtlvliksillaafiiylrllsfvkekqvennslassqninxee*kkn
kkn

Frame C:
rtfnlvffnnfsyitsngssfn*fillfykldiiiyy******yy***************
*******y***ywy**l*ykstks*ykttttitstnvysiryfslfk---

---iat*ssqyvpthnngcyahyyistswriledvqrvv*lvfvlv*fvwvgwvnlvish
lviqil*qvlifpvvill*siiisillafkpc*lvillncssfsflwlmlpiwlsnplai
viinknphyyhhleqalislmnyngmv*lvhywivvfvgqifsslvfvflfnviifsfgq
fslqnifmkywm*lwf**nqsy*lll*fi*dyyhl*kknklkiih*lhlki*xkknkkki
kkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD204 (SSD204Q) /CSM/SS/SSD2-A/SSD204Q.Seq.d/                       1415   0.0
CHF750 (CHF750Q) /CSM/CH/CHF7-C/CHF750Q.Seq.d/                         38   0.27
VSK393 (VSK393Q) /CSM/VS/VSK3-D/VSK393Q.Seq.d/                         36   1.1
VSK388 (VSK388Q) /CSM/VS/VSK3-D/VSK388Q.Seq.d/                         36   1.1
VSI886 (VSI886Q) /CSM/VS/VSI8-D/VSI886Q.Seq.d/                         36   1.1
VSI667 (VSI667Q) /CSM/VS/VSI6-C/VSI667Q.Seq.d/                         36   1.1
VSI608 (VSI608Q) /CSM/VS/VSI6-A/VSI608Q.Seq.d/                         36   1.1
VSI195 (VSI195Q) /CSM/VS/VSI1-D/VSI195Q.Seq.d/                         36   1.1
VSI154 (VSI154Q) /CSM/VS/VSI1-C/VSI154Q.Seq.d/                         36   1.1
VSH789 (VSH789Q) /CSM/VS/VSH7-D/VSH789Q.Seq.d/                         36   1.1
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.  1253  0.0  6
AC131128|AC131128.5 Rattus norvegicus clone CH230-23C17, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50  0.056  1
AX059536|AX059536.1 Sequence 269 from Patent WO0055325.           50  0.089  2
AE001438|AE001438.3 Clostridium acetobutylicum megaplasmid pSOL1, complete sequence.    38  0.52  7
AF118223|AF118223.2 Arabidopsis thaliana BAC T4B21.               50  0.56  2
AF117611|AF117611.1 Dictyostelium discoideum DosA protein (dosA) gene, complete cds.    38  0.56  2
AC099124|AC099124.6 Rattus norvegicus clone CH230-203N16, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.88  1
AC006218|AC006218.4 Arabidopsis thaliana chromosome 2 clone F17L24 map GPC6, complete sequence.    40  0.92  5
AL161501|AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.    50  1.1  2
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    32  1.4  9
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM478595_4(AM478595|pid:none) Vitis vinifera contig VV78X111272....    76   2e-12
FM992688_474(FM992688|pid:none) Candida dubliniensis CD36 chromo...    71   7e-11
AM270328_4(AM270328|pid:none) Aspergillus niger contig An15c0010...    69   2e-10
AF348498_1(AF348498|pid:none) Candida albicans strain SC5314 put...    69   4e-10
(Q8TGB2) RecName: Full=GPI ethanolamine phosphate transferase 2;...    69   4e-10
(Q6C7Q6) RecName: Full=GPI ethanolamine phosphate transferase 2;...    62   3e-08
AF321466_1(AF321466|pid:none) Yarrowia lipolytica putative prote...    62   3e-08
AM920428_193(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    59   2e-07
AE013599_435(AE013599|pid:none) Drosophila melanogaster chromoso...    57   8e-07
(Q6BZ57) RecName: Full=GPI ethanolamine phosphate transferase 2;...    57   8e-07
protein update 2009. 6.10
PSORT 

 psg: 0.75  gvh: 0.59  alm: 0.26  top: 0.60  tms: 0.07  mit: 0.52  mip: 0.18
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.21  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSD204 is nuc
5' end seq. ID SSD204F
5' end seq. 
>SSD204F.Seq
GNAGAACATTTAACTTGGTATTTTTTAACAACTTCAGTTATATTACTTCAAATGGCTCCT
CATTCAATTAGTTTATTCTTTTATTTTACAAATTGGATATCATCATATACTACTAATAAT
AGTAATAATAATATTATTAATAATAATAATAATAATAATAATAATAATAATAGTAATAAT
AATAATAATAATAATAATAATAATATTAATAGTAGTACTGGTATTAATAGTTATAATACA
AATCAACAAAATCGTAATACAAAACAACAACAACAATCACTTCAACAAATGTTTATTCTA
TTAGGTATTTTAGTTTGTTTAAGA----------
Length of 5' end seq. 324
3' end seq. ID SSD204Z
3' end seq. 
>SSD204Z.Seq
----------CTATTGCTACATAAAGTTCACAATATGTCCCTACTCACAATAATGGGTGT
TATGCACATTACTACATCTCTACCTCCTGGAGGATACTGGAAGACGTGCAAAGAGTGGTA
TGACTGGTGTTTGTGTTGGTATGATTTGTTTGGGTTGGTTGGGTCAATTTGGTTATTTCG
CATTTGGTAATTCAAATTCTTTAGCAAGTATTGATATTTCCGGTAGTTATACTGCTTTGA
TCGATTATAATCAGTATCTTGTTGGCATTCAAACCTTGTTAATTGGTTATACTTCTCAAT
TGTTCTTCTTTTTCGTTTCTTTGGCTTATGTTACCCATTTGGCTGTCAAATCCATTAGCA
ATAGTAATCATCAACAAGAACCCTCATTATTACCATCACCTGGAACAAGCTCTGATATCA
TTGATGAATTACAATGGTATGGTTTAGTTAGTGCACTATTGGATTGTGGTATTCGTTGGA
CAAATATTTTCATCTTTAGTATTTGTATTCTTATTCAACGTTATCATCTTTTCATTTGGA
CAGTTTTCTCTCCAAAATATATTTATGAAGTATTGGATGTAACTTTGGTTTTAATAAAAT
CAATCCTATTAGCTGCTTTTATAATTTATCTAAGATTATTATCATTTGTAAAAGAAAAAC
AAGTTGAAAATAATTCATTAGCTTCATCTCAAAATATAAATNAAGAAGAATAAAAAAAAA
ATAAAAAAAACAA
Length of 3' end seq. 723
Connected seq. ID SSD204P
Connected seq. 
>SSD204P.Seq
GNAGAACATTTAACTTGGTATTTTTTAACAACTTCAGTTATATTACTTCAAATGGCTCCT
CATTCAATTAGTTTATTCTTTTATTTTACAAATTGGATATCATCATATACTACTAATAAT
AGTAATAATAATATTATTAATAATAATAATAATAATAATAATAATAATAATAGTAATAAT
AATAATAATAATAATAATAATAATATTAATAGTAGTACTGGTATTAATAGTTATAATACA
AATCAACAAAATCGTAATACAAAACAACAACAACAATCACTTCAACAAATGTTTATTCTA
TTAGGTATTTTAGTTTGTTTAAGA----------CTATTGCTACATAAAGTTCACAATAT
GTCCCTACTCACAATAATGGGTGTTATGCACATTACTACATCTCTACCTCCTGGAGGATA
CTGGAAGACGTGCAAAGAGTGGTATGACTGGTGTTTGTGTTGGTATGATTTGTTTGGGTT
GGTTGGGTCAATTTGGTTATTTCGCATTTGGTAATTCAAATTCTTTAGCAAGTATTGATA
TTTCCGGTAGTTATACTGCTTTGATCGATTATAATCAGTATCTTGTTGGCATTCAAACCT
TGTTAATTGGTTATACTTCTCAATTGTTCTTCTTTTTCGTTTCTTTGGCTTATGTTACCC
ATTTGGCTGTCAAATCCATTAGCAATAGTAATCATCAACAAGAACCCTCATTATTACCAT
CACCTGGAACAAGCTCTGATATCATTGATGAATTACAATGGTATGGTTTAGTTAGTGCAC
TATTGGATTGTGGTATTCGTTGGACAAATATTTTCATCTTTAGTATTTGTATTCTTATTC
AACGTTATCATCTTTTCATTTGGACAGTTTTCTCTCCAAAATATATTTATGAAGTATTGG
ATGTAACTTTGGTTTTAATAAAATCAATCCTATTAGCTGCTTTTATAATTTATCTAAGAT
TATTATCATTTGTAAAAGAAAAACAAGTTGAAAATAATTCATTAGCTTCATCTCAAAATA
TAAATNAAGAAGAATAAAAAAAAAATAAAAAAAACAA
Length of connected seq. 1047
Full length Seq ID -
Full length Seq. -
Length of full length seq. -