>SSD186 (SSD186Q) /CSM/SS/SSD1-D/SSD186Q.Seq.d/
XXXXXXXXXXAAACATGTTTTACCATTCAAGGAGAATCTCAATCATTTGCAAACCTTTCT
CCAAAAGATTCTGCCAAGCAACAATTTAATGAAGCTGGTGAATTCATTGTTACCGATTCA
GCTAATATCTATGTCAATAAGGTTATAGTAAGTCAAAAACAACAACAAGATCAACAAAAA
TGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTAAAGATATGGAA
CAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATGAAAATGCTAAA
CCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTAAACCATCATCA
AATGTTAGTGATAACAAAGAAAACAATGCNTCCAATAAAGCCAAACCATCATCAAATACC
AATGATGCCAAACCAAAGACTGATGAAACTAAAACCAAAGCTGGTTCACCAAAAACTGAT
GCCAAACCAAAAACTACTCAAGATGAATCCCTTGATAGTGCTGATCCAGAAGCAAAAGCT
GGTGACAAAGCTAAACCAAAGACTGATGCCACTGCATCTGGTAATACCTCATCAACCCTT
GTTGTCAATGTTTTGCTTTTNGCTGCATCTGCTGCTTTAGCTCTTGTCCTTTAAA

---TCFTIQGESQSFANLSPKDSAKQQFNEAGEFIVTDSANIYVNKVIVSQKQQQDQQKW
FEKDAKDHANKMAATKDMEQHEHEDLQNTNDAQNNENAKPNSAATKDSNTANNKAKPSSN
VSDNKENNASNKAKPSSNTNDAKPKTDETKTKAGSPKTDAKPKTTQDESLDSADPEAKAG
DKAKPKTDATASGNTSSTLVVNVLLXAASAALALVL*

Frame A:
---nmfyhsrrisiickpfskrfcqati**sw*ihcyrfs*ylcq*gysksktttrstkm
v*kgc*rscqqngsn*rygtt*t*gspkyk*cskq*kc*tkfsshqrfkyr*q*s*tiik
c***qrkqcxq*sqtiikyq*cqtkd**n*nqswftkn*cqtknysr*ip**c*srsksw
*qs*tkd*chciw*ylinpccqcfafxciccfsscpl


Frame B:
---TCFTIQGESQSFANLSPKDSAKQQFNEAGEFIVTDSANIYVNKVIVSQKQQQDQQKW
FEKDAKDHANKMAATKDMEQHEHEDLQNTNDAQNNENAKPNSAATKDSNTANNKAKPSSN
VSDNKENNASNKAKPSSNTNDAKPKTDETKTKAGSPKTDAKPKTTQDESLDSADPEAKAG
DKAKPKTDATASGNTSSTLVVNVLLXAASAALALVL*


Frame C:
---hvlpfkenlnhlqtflqkilpsnnlmklvnsllpiqlismsirl**vknnnkinkng
lkrmlkimptkwqqlkiwnnmnmriskiqmmlktmkmlnqiqqppkiqipltiklnhhqm
lvitkktmxpikpnhhqipmmpnqrlmklkpklvhqklmpnqkllkmnplivliqkqklv
tklnqrlmplhlviphqpllsmfcfxlhlll*llsfk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD186 (SSD186Q) /CSM/SS/SSD1-D/SSD186Q.Seq.d/                       1267   0.0
SSK563 (SSK563Q) /CSM/SS/SSK5-C/SSK563Q.Seq.d/                       1237   0.0
SSI241 (SSI241Q) /CSM/SS/SSI2-B/SSI241Q.Seq.d/                       1235   0.0
SSG743 (SSG743Q) /CSM/SS/SSG7-B/SSG743Q.Seq.d/                       1209   0.0
SSL677 (SSL677Q) /CSM/SS/SSL6-D/SSL677Q.Seq.d/                       1203   0.0
CHR609 (CHR609Q) /CSM/CH/CHR6-A/CHR609Q.Seq.d/                       1132   0.0
SSF377 (SSF377Q) /CSM/SS/SSF3-D/SSF377Q.Seq.d/                       1128   0.0
SLC492 (SLC492Q) /CSM/SL/SLC4-D/SLC492Q.Seq.d/                       1070   0.0
CHE847 (CHE847Q) /CSM/CH/CHE8-B/CHE847Q.Seq.d/                       1049   0.0
CHM463 (CHM463Q) /CSM/CH/CHM4-C/CHM463Q.Seq.d/                       1035   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC108246|AC108246.5 Rattus norvegicus clone CH230-226E23, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    54  0.038  2
AX145140|AX145140.1 Sequence 3862 from Patent WO0134809.          38  0.14  2
AF269822|AF269822.1 Staphylococcus epidermidis strain SR1 clone step.1024f03 genomic sequence.    38  0.14  2
AC135399|AC135399.2 Rattus norvegicus clone CH230-12I11, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  0.14  2
AC114166|AC114166.4 Rattus norvegicus clone CH230-165F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  0.15  3
AC022222|AC022222.34 Homo sapiens chromosome 12 clone RP11-525I3, WORKING DRAFT SEQUENCE, 26 unordered pieces.    44  0.16  4
AC024225|AC024225.37 Homo sapiens 12 BAC RP11-16A24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    48  0.17  3
AC126170|AC126170.6 Homo sapiens 3 BAC RP11-101G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  0.17  3
AL451141|AL451141.13 Human DNA sequence from clone RP11-265E5 on chromosome 6.    36  0.20  3
AC074112|AC074112.8 Homo sapiens clone RP11-204G8, complete sequence.    38  0.26  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB426706_1(AB426706|pid:none) Entamoeba histolytica gene for ser...    45   0.001
U61842_1(U61842|pid:none) Fusarium solani cutinase negative acti...    42   0.016
DQ073920_1(DQ073920|pid:none) Penaeus monodon lymphoid organ exp...    41   0.027
AE014187_647(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.035
AP006627_3088(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...    40   0.045
EU420000_1(EU420000|pid:none) Sus scrofa isolate DPP589 dentin s...    40   0.059
AF163151_1(AF163151|pid:none) Homo sapiens dentin sialophosphopr...    40   0.077
EU278622_1(EU278622|pid:none) Homo sapiens haplotype 1D dentin s...    40   0.077
EU278639_1(EU278639|pid:none) Homo sapiens haplotype 38A dentin ...    40   0.077
EU278636_1(EU278636|pid:none) Homo sapiens haplotype 36A dentin ...    40   0.077

 psg: 0.75  gvh: 0.37  alm: 0.24  top: 0.53  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSD186 is cyt

>SSD186Z.Seq
----------AAACATGTTTTACCATTCAAGGAGAATCTCAATCATTTGCAAACCTTTCT
CCAAAAGATTCTGCCAAGCAACAATTTAATGAAGCTGGTGAATTCATTGTTACCGATTCA
GCTAATATCTATGTCAATAAGGTTATAGTAAGTCAAAAACAACAACAAGATCAACAAAAA
TGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTAAAGATATGGAA
CAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATGAAAATGCTAAA
CCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTAAACCATCATCA
AATGTTAGTGATAACAAAGAAAACAATGCNTCCAATAAAGCCAAACCATCATCAAATACC
AATGATGCCAAACCAAAGACTGATGAAACTAAAACCAAAGCTGGTTCACCAAAAACTGAT
GCCAAACCAAAAACTACTCAAGATGAATCCCTTGATAGTGCTGATCCAGAAGCAAAAGCT
GGTGACAAAGCTAAACCAAAGACTGATGCCACTGCATCTGGTAATACCTCATCAACCCTT
GTTGTCAATGTTTTGCTTTTNGCTGCATCTGCTGCTTTAGCTCTTGTCCTTTAAA