>SSD171 (SSD171Q) /CSM/SS/SSD1-C/SSD171Q.Seq.d/
AAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACAAGC
CATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGA
ACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATC
AACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAG
TTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAA
TGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAAC
CCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTT
AACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATT
TATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAA
TGAATTCTATGCTATTACTCTATCTGGTTATGATGATTCAAATAGTGATATTATTAGAGT
TCAATCAATTXXXXXXXXXX

RPSREELQREERQRDQEEQAIRRKRQNDEYLELQREKEREQMQRDIERKAAAEESRKHKS
TIFQYIMRDGKLEREFSSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRT
LNINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRN
EFYAITLSGYDDSNSDIIRVQS---

Frame A:
ktis*rtskrrktkrsrrtshkkketk**vs*iakrkrkrtnat*yrekscsrrvqkt*i
nhfpiyyerw*igkrilkcklgsifkegg*il*n*tntwkcfil*mcnwiqlfik*rqkn
pqhqhfrf*rnhfkyss*plnqr*knstlnfirtih*fiiy**w*fiqyn*rstskil*k
*ilcyysiwl**fk**yy*ssin---


Frame B:
RPSREELQREERQRDQEEQAIRRKRQNDEYLELQREKEREQMQRDIERKAAAEESRKHKS
TIFQYIMRDGKLEREFSSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRT
LNINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRN
EFYAITLSGYDDSNSDIIRVQS---


Frame C:
dhlvknfkekkdkeikknkp*eerdkmmsilnckekkkenkcnvi*reklqqkspeninq
pfsnil*emvnwkensqvqvgvhiqrrrlnimkldqylemfyslnvqldpivyqvkakep
ststf*vlkksfqilklts*pkvkkfhsqfh*nhtlihhllmmvihtiqlafhfkdsiem
nsmlllylvmmiqivillefnq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD171 (SSD171Q) /CSM/SS/SSD1-C/SSD171Q.Seq.d/                       1092   0.0
SLE641 (SLE641Q) /CSM/SL/SLE6-B/SLE641Q.Seq.d/                       1092   0.0
CFF669 (CFF669Q) /CSM/CF/CFF6-C/CFF669Q.Seq.d/                       1065   0.0
CFJ394 (CFJ394Q) /CSM/CF/CFJ3-D/CFJ394Q.Seq.d/                       1059   0.0
SFK688 (SFK688Q) /CSM/SF/SFK6-D/SFK688Q.Seq.d/                       1057   0.0
SFB309 (SFB309Q) /CSM/SF/SFB3-A/SFB309Q.Seq.d/                       1055   0.0
SFG546 (SFG546Q) /CSM/SF/SFG5-B/SFG546Q.Seq.d/                       1049   0.0
SFB634 (SFB634Q) /CSM/SF/SFB6-B/SFB634Q.Seq.d/                       1049   0.0
CHD662 (CHD662Q) /CSM/CH/CHD6-C/CHD662Q.Seq.d/                       1049   0.0
CFK415 (CFK415Q) /CSM/CF/CFK4-A/CFK415Q.Seq.d/                       1049   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116940|AC116940.2 Pan troglodytes clone RP43-166L2, WORKING DRAFT SEQUENCE.    50  0.033  1
BX493441|BX493441.1 Homo sapiens mRNA; EST DKFZp781B1440_r1  (from clone DKFZp781B1440).    40  0.090  2
AC116436|AC116436.2 Pan troglodytes clone RP43-55P4, WORKING DRAFT SEQUENCE, 4 ordered pieces.    50  0.12  2
BU008337|BU008337.1 QGH7E18.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGH7E18, mRNA sequence.    48  0.13  1
BQ056992|BQ056992.1 AGENCOURT_6769370 NIH_MGC_99 Homo sapiens cDNA clone IMAGE:5812136 5', mRNA sequence.    48  0.13  1
BU004884|BU004884.1 QGG6H24.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG6H24, mRNA sequence.    48  0.13  1
BU001455|BU001455.1 QGG27O05.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG27O05, mRNA sequence.    48  0.13  1
BQ866265|BQ866265.1 QGC7H23.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC7H23, mRNA sequence.    48  0.13  1
BQ862631|BQ862631.1 QGC21K01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21K01, mRNA sequence.    48  0.13  1
AC084435|AC084435.2 Homo sapiens chromosome 8 clone RP11-91G3 map 8, WORKING DRAFT SEQUENCE, 4 unordered pieces.    36  0.20  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844506_202(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.024
CP000500_224(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    41   0.031
AF506894_1(AF506894|pid:none) Papaya ringspot virus isolate THW-...    35   1.3
AC007213_9(AC007213|pid:none) Arabidopsis thaliana chromosome 2 ...    34   3.8
AY839864_1(AY839864|pid:none) Papaya ringspot virus isolate PRSV...    34   3.8
BX571661_53(BX571661|pid:none) Wolinella succinogenes, complete ...    33   4.9
BC118963_1(BC118963|pid:none) Mus musculus RIKEN cDNA 4933424A10...    33   4.9
S42875(S42875) dihydrolipoamide S-succinyltransferase (EC 2.3.1....    33   4.9
AE016828_1206(AE016828|pid:none) Coxiella burnetii RSA 493, comp...    33   4.9
CP000770_2(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, c...    33   4.9

 psg: 0.75  gvh: 0.06  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for SSD171 is nuc

>SSD171F.Seq
AAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACAAGC
CATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGA
ACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATC
AACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGAATTCTCAAGTGCAAG
TTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAA
TGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAAC
CCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTT
AACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATT
TATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAA
TGAATTCTATGCTATTACTCTATCTGGTTATGATGATTCAAATAGTGATATTATTAGAGT
TCAATCAATT----------