>SSD169 (SSD169Q) /CSM/SS/SSD1-C/SSD169Q.Seq.d/
CTTCAAAAGAAATTTGCATTTAGAAGTGTTCAAAATGGTCATATGTTTATGATNNNTTGT
TTCATAGCAGAGGATCAAAGATTAACCAATGCATTGGATTTCAATAGTGGTCCTGGTAAA
TGTTTATTCCTAACTAGAATAGTGGTTGGTTGGATTGCATTGGGAGTCGCTAGTAATGCC
TATGAAAAATGTTTACAATATGTTAAGCAAAGAAATCAATTTGGTCAACCATTAGCTCAA
TTCCAATTGGTTCAAGAGAGATTGGTTAAAATGTGTTCAAATATTCAAGCAATCTCTTTG
ATGTGTCATCGTGTTTCACAACTTTTCGATCAAGGTAAATTATCAAGTGGTCAAGTTGGA
CTTTTAAAAGCTTTCTCAACCTCAAAAGCCCGTGAAGTAGTTTCAATGGCTCGTGAATTA
TTCGGTGGTAATGGTATACTTTTAGATGATATAGGTAGAAATTTCCTTGATATGGAAGGT
ATCTATACCTTTGAAGGTACTTATGATGTAAATACTTTAATTGCTGCAAGAGAAATTACT
GGATTATCTGCTATATCTTCAATAAATCATTCAAAATCACAACAACAACAAXXXXXXXXX
X

LQKKFAFRSVQNGHMFMXXCFIAEDQRLTNALDFNSGPGKCLFLTRIVVGWIALGVASNA
YEKCLQYVKQRNQFGQPLAQFQLVQERLVKMCSNIQAISLMCHRVSQLFDQGKLSSGQVG
LLKAFSTSKAREVVSMARELFGGNGILLDDIGRNFLDMEGIYTFEGTYDVNTLIAAREIT
GLSAISSINHSKSQQQ---

Frame A:
LQKKFAFRSVQNGHMFMXXCFIAEDQRLTNALDFNSGPGKCLFLTRIVVGWIALGVASNA
YEKCLQYVKQRNQFGQPLAQFQLVQERLVKMCSNIQAISLMCHRVSQLFDQGKLSSGQVG
LLKAFSTSKAREVVSMARELFGGNGILLDDIGRNFLDMEGIYTFEGTYDVNTLIAAREIT
GLSAISSINHSKSQQQ---


Frame B:
fkrnlhlevfkmvicl*xxvs*qrikd*pmhwisivvlvnvys*le*wlvglhweslvmp
mknvynmlskeinlvnh*lnsnwfkrdwlkcvqifkqsl*cvivfhnfsikvnyqvvkld
f*klsqpqkpvk*fqwlvnysvvmvyf*mi*veisliwkvsiplkvlmm*il*llqekll
dyllylq*iiqnhnnn---


Frame C:
skeici*kcskwsyvydxlfhsrgskinqcigfq*wsw*mfipn*nsgwldcigsr**cl
*kmftic*akksiwstissipigsreig*nvfkyssnlfdvsscfttfrsr*iikwsswt
fksflnlksp*ssfngs*iirw*wytfr*yr*kfp*ygrylyl*ryl*ckyfncckrnyw
iicyifnksfkitttt---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD169 (SSD169Q) /CSM/SS/SSD1-C/SSD169Q.Seq.d/                       1154   0.0
SSM850 (SSM850Q) /CSM/SS/SSM8-C/SSM850Q.Seq.d/                       1104   0.0
AFJ772 (AFJ772Q) /CSM/AF/AFJ7-C/AFJ772Q.Seq.d/                         52   1e-05
VSE638 (VSE638Q) /CSM/VS/VSE6-B/VSE638Q.Seq.d/                         38   0.15
VSA552 (VSA552Q) /CSM/VS/VSA5-C/VSA552Q.Seq.d/                         38   0.15
SFE505 (SFE505Q) /CSM/SF/SFE5-A/SFE505Q.Seq.d/                         38   0.15
SFD768 (SFD768Q) /CSM/SF/SFD7-C/SFD768Q.Seq.d/                         38   0.15
SFC844 (SFC844Q) /CSM/SF/SFC8-B/SFC844Q.Seq.d/                         38   0.15
SFB161 (SFB161Q) /CSM/SF/SFB1-C/SFB161Q.Seq.d/                         38   0.15
CHE459 (CHE459Q) /CSM/CH/CHE4-C/CHE459Q.Seq.d/                         38   0.15

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF465306|AF465306.1 Dictyostelium discoideum ABC transporter ABCA.4 (abca4) gene, complete cds.  1138  0.0  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1138  0.0  1
U06228|U06228.1 Dictyostelium discoideum CRAC (dagA) gene, complete cds.    52  0.008  1
BX276117|BX276117.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-112K18.    38  0.28  3
AW617921|AW617921.1 EST313995 L. pennellii trichome, Cornell University Lycopersicon pennellii cDNA clone cLPT11K8 5', mRNA sequence.    46  0.49  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36  0.54  6
AC018571|AC018571.5 Homo sapiens chromosome 17 clone RP11-47C2 map 17, WORKING DRAFT SEQUENCE, 23 unordered pieces.    44  0.69  3
BG626820|BG626820.1 cC-esflcLEL14H20d1 Tomato flower library from a mixture of developmental stages Lycopersicon esculentum cDNA clone cC-esflcLEL14H20d1, mRNA sequence.    38  0.77  2
AW036122|AW036122.1 EST274498 tomato seed, TAMU Lycopersicon esculentum cDNA clone cLEE1M13 similar to acyl-CoA dehydrogenase, putative, mRNA sequence.    38  1.2  2
AW036123|AW036123.1 EST274499 tomato seed, TAMU Lycopersicon esculentum cDNA clone cLEE1M13 similar to acyl-CoA dehydrogenase, putative, mRNA sequence.    38  1.4  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008212_1057(AP008212|pid:none) Oryza sativa (japonica cultivar...   173   3e-42
BT042828_1(BT042828|pid:none) Zea mays full-length cDNA clone ZM...   173   4e-42
EU959603_1(EU959603|pid:none) Zea mays clone 218822 glutaryl-CoA...   173   4e-42
(Q96329) RecName: Full=Acyl-coenzyme A oxidase 4, peroxisomal;  ...   168   9e-41
EF085075_1(EF085075|pid:none) Picea sitchensis clone WS02713_M11...   168   1e-40
AC124144_11(AC124144|pid:none) Oryza sativa (japonica cultivar-g...   166   5e-40
AK222131_1(AK222131|pid:none) Arabidopsis thaliana mRNA for Shor...   164   1e-39
AB333786_1(AB333786|pid:none) Glycine max mRNA for peroxisomal a...   164   2e-39
EU966480_1(EU966480|pid:none) Zea mays clone 294790 glutaryl-CoA...   160   3e-38
CP000909_3764(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...   159   7e-38

 psg: 0.95  gvh: 0.44  alm: 0.28  top: 0.60  tms: 0.07  mit: 0.38  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSD169 is cyt

>SSD169F.Seq
CTTCAAAAGAAATTTGCATTTAGAAGTGTTCAAAATGGTCATATGTTTATGATNNNTTGT
TTCATAGCAGAGGATCAAAGATTAACCAATGCATTGGATTTCAATAGTGGTCCTGGTAAA
TGTTTATTCCTAACTAGAATAGTGGTTGGTTGGATTGCATTGGGAGTCGCTAGTAATGCC
TATGAAAAATGTTTACAATATGTTAAGCAAAGAAATCAATTTGGTCAACCATTAGCTCAA
TTCCAATTGGTTCAAGAGAGATTGGTTAAAATGTGTTCAAATATTCAAGCAATCTCTTTG
ATGTGTCATCGTGTTTCACAACTTTTCGATCAAGGTAAATTATCAAGTGGTCAAGTTGGA
CTTTTAAAAGCTTTCTCAACCTCAAAAGCCCGTGAAGTAGTTTCAATGGCTCGTGAATTA
TTCGGTGGTAATGGTATACTTTTAGATGATATAGGTAGAAATTTCCTTGATATGGAAGGT
ATCTATACCTTTGAAGGTACTTATGATGTAAATACTTTAATTGCTGCAAGAGAAATTACT
GGATTATCTGCTATATCTTCAATAAATCATTCAAAATCACAACAACAACAA---------
-