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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD162
Library SS
(Link to library)
Clone ID SSD162
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14131-1
Original site URL
Representative seq. ID SSD162E
(Link to Original site)
Representative DNA sequence 
>SSD162 (SSD162Q) /CSM/SS/SSD1-C/SSD162Q.Seq.d/
ACATCTTAAAAACATATACCACAGAAACATGACATACACAACTAAACAAGTAGGAGAAAC
TGGTTCACTTGAATACCGTCTTTTCTTTTTAAAAGATAATAAACCAGTATCATCATTCCA
TGATGTTCCATTATGGGTTAATAAAGAGAAACAAATTGTTAATATGTTAGTTGAAATTCC
AAGAGGTACCAATGCCAAATTAGAGATTGCCACCAAAGAATATATGAATCCAATTAAACA
AGATGTTAAAGATGGTAAATTAAGATTTGTTCACGACAAATACCCATTCAACTATGGTGC
ATTACCACAAACTTGGGAAAGTCCACACTCACCCATCAACCGGTGCTAAAGGTGATAATG
ATCCATTAGACGCTTGTGAAATTGGTTCTGGTCAAGGTGTAACTGGTGAATTCAAACAAG
TTAAAGTTCTTGGTGTTTTCGCTATGATTGATGCCGGNGAAACCGATTGGAAGANCCTTT
GCATTGACGTTAACGATCCAATTGCTTCACAAATCAACTCTCAAGANGATATTGAAAAAC
ATTTACCAGGTAAAATTAATGAAGTCTNCACCTTTTTAAGAGATTACANAATCCCAGATG
GTAAAGGTCCAAATCAATTCGCTTTGCTTTTGNTGGTAAATTGCAATCAATTGATTTCTC
CATGAAAATCATTGCGGAAACTGANGNCTGANTGGAAAGATTTAGTTAGAGGTAAAACAA
AATCATCACTCTCTGTTGTAAACACAACTTTAAATGATTCAAATACTGTTNCCGCTGATG
TTGCTGCTCAAAAACTTAACTTTTGACTCAATAATNATANTAATAAAATAATTTCAAAAC
TATAGAAANTAAATAATGTTTTGGTTTAATGTA
sequence update 1999. 4. 5
Translated Amino Acid sequence 
ilktyttet*htqlnk*eklvhlntvfsf*kiinqyhhsmmfhyglikrnkllic*lkfq
evpmpn*rlppkni*iqlnkmlkmvn*DLFTTNTHSTMVHYHKLGKVHTHPSTGAKGDND
PLDACEIGSGQGVTGEFKQVKVLGVFAMIDAGETDWKXLCIDVNDPIASQINSQXDIEKH
LPGKINEVXTFLRDYXIPDGKGPNQFALLLXVNCNQLISP*kslrklxxxwkdlvrgktk
sslsvvnttlndsntvxadvaaqklnf*lnnxxnkiiskl*kxnnvlv*c
Translated Amino Acid sequence (All Frames) 
Frame A:
ts*khipqkhdihn*tsrrnwft*ipsflfkr**tsiiip*csimg**retnc*yvs*ns
kryqcqirdchqriyesn*trc*rw*ikicsrqipiqlwcittnlgkstlthqpvlkvim
ih*tlvklvlvkv*lvnsnklkflvfsl*lmpxkpigrxfaltltiqllhkstlkxilkn
iyqvklmksxpf*eitxsqmvkvqinslcfxw*iain*flhenhcgn*xlxgki*levkq
nhhsll*tql*miqilxplmlllknltfdsixixik*fqnyrx*imfwfnv


Frame B:
hlkniyhrnmtyttkqvgetgsleyrlfflkdnkpvssfhdvplwvnkekqivnmlveip
rgtnakleiatkeymnpikqdvkdgklrfvhdkypfnygalpqtwesphspinrc*r***
sirrl*nwfwsrcnw*iqts*sswcfryd*crxnrlexplh*r*rsncftnqlsrxy*kt
ftr*n**slhlfkrlxnprw*rsksirfafxgklqsidfsmkiiaetxx*xerfs*r*nk
iitlcckhnfk*fkycxr*cccskt*lltq*xx**nnfktiexk*cfglm


Frame C:
ilktyttet*htqlnk*eklvhlntvfsf*kiinqyhhsmmfhyglikrnkllic*lkfq
evpmpn*rlppkni*iqlnkmlkmvn*DLFTTNTHSTMVHYHKLGKVHTHPSTGAKGDND
PLDACEIGSGQGVTGEFKQVKVLGVFAMIDAGETDWKXLCIDVNDPIASQINSQXDIEKH
LPGKINEVXTFLRDYXIPDGKGPNQFALLLXVNCNQLISP*kslrklxxxwkdlvrgktk
sslsvvnttlndsntvxadvaaqklnf*lnnxxnkiiskl*kxnnvlv*c
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD162 (SSD162Q) /CSM/SS/SSD1-C/SSD162Q.Seq.d/                       1653   0.0
SLC569 (SLC569Q) /CSM/SL/SLC5-C/SLC569Q.Seq.d/                       1524   0.0
VSJ527 (VSJ527Q) /CSM/VS/VSJ5-B/VSJ527Q.Seq.d/                       1491   0.0
AHN496 (AHN496Q) /CSM/AH/AHN4-D/AHN496Q.Seq.d/                       1469   0.0
VSC773 (VSC773Q) /CSM/VS/VSC7-D/VSC773Q.Seq.d/                        977   0.0
VSC662 (VSC662Q) /CSM/VS/VSC6-C/VSC662Q.Seq.d/                        967   0.0
SSE161 (SSE161Q) /CSM/SS/SSE1-C/SSE161Q.Seq.d/                        932   0.0
VSC388 (VSC388Q) /CSM/VS/VSC3-D/VSC388Q.Seq.d/                        894   0.0
VFA524 (VFA524Q) /CSM/VF/VFA5-A/VFA524Q.Seq.d/                        878   0.0
VSB190 (VSB190Q) /CSM/VS/VSB1-D/VSB190Q.Seq.d/                         40   0.056
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX488957|AX488957.1 Sequence 6257 from Patent WO02053728.         52  7e-17  5
CA756008|0    48  2e-11  4
BI508766|BI508766.1 BB170002B10G08.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170002B10G08 5', mRNA sequence.    50  3e-11  5
AL395832|AL395832.1 T7 end of clone AR0AA026D09 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    42  3e-08  4
BI946414|BI946414.1 bEST10.5' Honeybee brain cDNA library Apis mellifera cDNA 5' similar to nucleosome remodeling factor, inorganic pyrophosphatase, mRNA sequence.    50  4e-08  4
BI742405|BI742405.1 kt50d09.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:IPYR_CAEEL Q18680 PROBABLE INORGANIC PYROPHOSPHATASE ;, mRNA sequence.    36  2e-06  4
AX596898|AX596898.1 Sequence 2552 from Patent EP1258494.          46  4e-06  3
X13253|X13253.1 Yeast PPA gene for inorganic pyrophosphatase  (EC 3.6.1.1).    46  1e-05  3
Z35880|Z35880.1 S.cerevisiae chromosome II reading frame ORF YBR011c.    46  3e-05  3
BF015360|BF015360.1 kq63d02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:IPYR_CAEEL Q18680 PROBABLE INORGANIC PYROPHOSPHATASE ;, mRNA sequence.    36  4e-04  4
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54PV8) RecName: Full=Inorganic pyrophosphatase;          EC=3....   259   e-130
(Q6C1T4) RecName: Full=Inorganic pyrophosphatase;          EC=3....   146   9e-65
(Q6BWA5) RecName: Full=Inorganic pyrophosphatase;          EC=3....   142   4e-64
(P83777) RecName: Full=Inorganic pyrophosphatase;          EC=3....   138   3e-63
(Q5B912) RecName: Full=Inorganic pyrophosphatase;          EC=3....   136   4e-63
FM992689_798(FM992689|pid:none) Candida dubliniensis CD36 chromo...   138   4e-63
CR382125_766(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   138   1e-62
FN392319_22(FN392319|pid:none) Pichia pastoris GS115 chromosome ...   142   1e-62
(P13998) RecName: Full=Inorganic pyrophosphatase;          EC=3....   138   1e-62
CP000498_395(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   137   3e-62
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSD162 is cyt
5' end seq. ID SSD162F
5' end seq. 
>SSD162F.Seq
ACATCTTAAAAACATATACCACAGAAACATGACATACACAACTAAACAAGTAGGAGAAAC
TGGTTCACTTGAATACCGTCTTTTCTTTTTAAAAGATAATAAACCAGTATCATCATTCCA
TGATGTTCCATTATGGGTTAATAAAGAGAAACAAATTGTTAATATGTTAGTTGAAATTCC
AAGAGGTACCAATGCCAAATTAGAGATTGCCACCAAAGAATATATGAATCCAATTAAACA
AGATGTTAAAGATGGTAAATTAAGATTTGTTCACGACAAATACCCATTCAACTATGGTGC
ATTACCACAAACTTGGGAAAGTCCAGAACACACTCACCCATCAACCGGTGCTAAAGGTGA
TAATGATCCATTAGACGCTTGTGAAATTGGTTCTGGTCAAGGTGTAACTGGTGAATTCAA
ACAAGTTAAAGTTCTTGGTGTTTTCGCTATGATTGATGCCGGTGAAACCGATTGGAAGAT
CCTTTGCATTGACGTTAACGATCCAATTGCTTCACAAATCAACTCTCAAGAAGATATTGA
AAAACATTTACCAGGTAAAATTAATGAAGTCTACACCTTTTTAAGAGATTACAAAATCCC
AGATGGTAAAGGTCCAAATCAATTCGCTTT----------
Length of 5' end seq. 630
3' end seq. ID SSD162Z
3' end seq. 
>SSD162Z.Seq
----------CACTCACCCATCAACCGGTGCTAAAGGTGATAATGATCCATTAGACGCTT
GTGAAATTGGTTCTGGTCAAGGTGTAACTGGTGAATTCAAACAAGTTAAAGTTCTTGGTG
TTTTCGCTATGATTGATGCCGGAGAAACCGATTGGAAGAACCTTTGCATTGACGTTAACG
ATCCAATTGCTTCACAAATCAACTCTCAAGACGATATTGAAAAACATTTACCAGGTAAAA
TTNATGAAGTCTCCACCTTTTTAAGAGATTACACAATCCCAGATGGTNAAGGTCCAANTC
AATTCGCTTTTGNTGGTAAATTGCAATCAATTGATTTCTCCATGAAAATCATTGCGGAAA
CTGANGNCTGANTGGAAAGATTTAGTTAGAGGTAAAACAAAATCATCACTCTCTGTTGTA
AACACAACTTTAAATGATTCAAATACTGTTNCCGCTGATGTTGCTGCTCAAAAACTTAAC
TTTTGACTCAATAATNATANTAATAAAATAATTTCAAAACTATAGAAANTAAATAATGTT
TTGGTTTAATGTAAAAAAAAAA
Length of 3' end seq. 552
Connected seq. ID SSD162P
Connected seq. 
>SSD162P.Seq
ACATCTTAAAAACATATACCACAGAAACATGACATACACAACTAAACAAGTAGGAGAAAC
TGGTTCACTTGAATACCGTCTTTTCTTTTTAAAAGATAATAAACCAGTATCATCATTCCA
TGATGTTCCATTATGGGTTAATAAAGAGAAACAAATTGTTAATATGTTAGTTGAAATTCC
AAGAGGTACCAATGCCAAATTAGAGATTGCCACCAAAGAATATATGAATCCAATTAAACA
AGATGTTAAAGATGGTAAATTAAGATTTGTTCACGACAAATACCCATTCAACTATGGTGC
ATTACCACAAACTTGGGAAAGTCCAGAACACACTCACCCATCAACCGGTGCTAAAGGTGA
TAATGATCCATTAGACGCTTGTGAAATTGGTTCTGGTCAAGGTGTAACTGGTGAATTCAA
ACAAGTTAAAGTTCTTGGTGTTTTCGCTATGATTGATGCCGGTGAAACCGATTGGAAGAT
CCTTTGCATTGACGTTAACGATCCAATTGCTTCACAAATCAACTCTCAAGAAGATATTGA
AAAACATTTACCAGGTAAAATTAATGAAGTCTACACCTTTTTAAGAGATTACAAAATCCC
AGATGGTAAAGGTCCAAATCAATTCGCTTT----------CACTCACCCATCAACCGGTG
CTAAAGGTGATAATGATCCATTAGACGCTTGTGAAATTGGTTCTGGTCAAGGTGTAACTG
GTGAATTCAAACAAGTTAAAGTTCTTGGTGTTTTCGCTATGATTGATGCCGGAGAAACCG
ATTGGAAGAACCTTTGCATTGACGTTAACGATCCAATTGCTTCACAAATCAACTCTCAAG
ACGATATTGAAAAACATTTACCAGGTAAAATTNATGAAGTCTCCACCTTTTTAAGAGATT
ACACAATCCCAGATGGTNAAGGTCCAANTCAATTCGCTTTTGNTGGTAAATTGCAATCAA
TTGATTTCTCCATGAAAATCATTGCGGAAACTGANGNCTGANTGGAAAGATTTAGTTAGA
GGTAAAACAAAATCATCACTCTCTGTTGTAAACACAACTTTAAATGATTCAAATACTGTT
NCCGCTGATGTTGCTGCTCAAAAACTTAACTTTTGACTCAATAATNATANTAATAAAATA
ATTTCAAAACTATAGAAANTAAATAATGTTTTGGTTTAATGTAAAAAAAAAA
Length of connected seq. 1182
Full length Seq ID SSD162E
Full length Seq. 
>SSD162E.Seq
ACATCTTAAAAACATATACCACAGAAACATGACATACACAACTAAACAAGTAGGAGAAAC
TGGTTCACTTGAATACCGTCTTTTCTTTTTAAAAGATAATAAACCAGTATCATCATTCCA
TGATGTTCCATTATGGGTTAATAAAGAGAAACAAATTGTTAATATGTTAGTTGAAATTCC
AAGAGGTACCAATGCCAAATTAGAGATTGCCACCAAAGAATATATGAATCCAATTAAACA
AGATGTTAAAGATGGTAAATTAAGATTTGTTCACGACAAATACCCATTCAACTATGGTGC
ATTACCACAAACTTGGGAAAGTCCACACTCACCCATCAACCGGTGCTAAAGGTGATAATG
ATCCATTAGACGCTTGTGAAATTGGTTCTGGTCAAGGTGTAACTGGTGAATTCAAACAAG
TTAAAGTTCTTGGTGTTTTCGCTATGATTGATGCCGGNGAAACCGATTGGAAGANCCTTT
GCATTGACGTTAACGATCCAATTGCTTCACAAATCAACTCTCAAGANGATATTGAAAAAC
ATTTACCAGGTAAAATTAATGAAGTCTNCACCTTTTTAAGAGATTACANAATCCCAGATG
GTAAAGGTCCAAATCAATTCGCTTTGCTTTTGNTGGTAAATTGCAATCAATTGATTTCTC
CATGAAAATCATTGCGGAAACTGANGNCTGANTGGAAAGATTTAGTTAGAGGTAAAACAA
AATCATCACTCTCTGTTGTAAACACAACTTTAAATGATTCAAATACTGTTNCCGCTGATG
TTGCTGCTCAAAAACTTAACTTTTGACTCAATAATNATANTAATAAAATAATTTCAAAAC
TATAGAAANTAAATAATGTTTTGGTTTAATGTA
Length of full length seq. 873