>SSD159 (SSD159Q) /CSM/SS/SSD1-C/SSD159Q.Seq.d/
AAAAAAAAAATTAAATTTTATGAAAAAATGAAAATTTATCTTTGTCGAATTCAATTCCAA
AACCATCATTATATGTTTCTTGAAGATCAGCTAACATACAGAGTATTAAGACGATTTTGT
TTAAAGATGATCCAAATTTCCTCGGTATGTTGAAATTATTTTAAAATGATTAATTTTTAA
AAAAAAAGTTTTCCACATACACACCGGTTGGAGCTTACTAAATTAGGTAAAGAAATATCT
AGAAAAAAAATAAAAAAAATAATAATAAAATAAAATTAATAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAXXXXXXXXXX

KKKIKFYEKMKIYLCRIQFQNHHYMFLEDQLTYRVLRRFCLKMIQISSVC*nyfkminf*
kksfphthrleltklgkeisrkkikkiiik*n**qkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkk---

Frame A:
KKKIKFYEKMKIYLCRIQFQNHHYMFLEDQLTYRVLRRFCLKMIQISSVC*nyfkminf*
kksfphthrleltklgkeisrkkikkiiik*n**qkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkk---


Frame B:
kkklnfmkk*kfifvefnsktiiicflkis*htey*ddfv*r*skfpryveiilk*lifk
kkvfhihtgwslln*vkkylekk*kk***nkinnkkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkk---


Frame C:
kkn*il*knenlslsnsipkpslyvs*rsaniqsiktilfkddpnflgmlklf*nd*flk
kkfstytpvgay*ir*rni*kknkknnnkiklitkkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD159 (SSD159Q) /CSM/SS/SSD1-C/SSD159Q.Seq.d/                        406   e-112
SSA386 (SSA386Q) /CSM/SS/SSA3-D/SSA386Q.Seq.d/                         82   7e-15
AFI801 (AFI801Q) /CSM/AF/AFI8-A/AFI801Q.Seq.d/                         36   0.38
VSK275 (VSK275Q) /CSM/VS/VSK2-D/VSK275Q.Seq.d/                         34   1.5
VSK118 (VSK118Q) /CSM/VS/VSK1-A/VSK118Q.Seq.d/                         34   1.5
VSG764 (VSG764Q) /CSM/VS/VSG7-C/VSG764Q.Seq.d/                         34   1.5
VSE130 (VSE130Q) /CSM/VS/VSE1-B/VSE130Q.Seq.d/                         34   1.5
VSD439 (VSD439Q) /CSM/VS/VSD4-B/VSD439Q.Seq.d/                         34   1.5
VSC721 (VSC721Q) /CSM/VS/VSC7-A/VSC721Q.Seq.d/                         34   1.5
VSC230 (VSC230Q) /CSM/VS/VSC2-B/VSC230Q.Seq.d/                         34   1.5

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   285  e-101  3
AC112373|AC112373.4 Rattus norvegicus clone CH230-242I7, *** SEQUENCING IN PROGRESS ***, 119 unordered pieces.    48  0.079  1
AC130243|AC130243.5 Rattus norvegicus clone CH230-301P10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48  0.12  4
AQ658824|AQ658824.1 Sheared DNA-27F15.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-27F15, DNA sequence.    46  0.31  1
AC110828|AC110828.4 Rattus norvegicus clone CH230-213F24, *** SEQUENCING IN PROGRESS ***, 89 unordered pieces.    48  0.48  2
AC133421|AC133421.2 Rattus norvegicus clone CH230-409E8, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    48  0.51  2
AC117879|AC117879.5 Rattus norvegicus clone CH230-34E19, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    48  0.57  5
BZ107268|BZ107268.1 CH230-228G23.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-228G23, DNA sequence.    38  0.63  2
AC132826|AC132826.2 Homo sapiens chromosome 8 clone RP13-943H9 map 8, LOW-PASS SEQUENCE SAMPLING.    44  1.2  1
AC130109|AC130109.4 Rattus norvegicus clone CH230-55A9, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.2  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 276,509,202

 psg: 0.73  gvh: 0.38  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.04
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSD159 is nuc

>SSD159F.Seq
AAAAAAAAAATTAAATTTTATGAAAAAATGAAAATTTATCTTTGTCGAATTCAATTCCAA
AACCATCATTATATGTTTCTTGAAGATCAGCTAACATACAGAGTATTAAGACGATTTTGT
TTAAAGATGATCCAAATTTCCTCGGTATGTTGAAATTATTTTAAAATGATTAATTTTTAA
AAAAAAAGTTTTCCACATACACACCGGTTGGAGCTTACTAAATTAGGTAAAGAAATATCT
AGAAAAAAAATAAAAAAAATAATAATAAAATAAAATTAATAACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA