>SSD151 (SSD151Q) /CSM/SS/SSD1-C/SSD151Q.Seq.d/
CAAATTTTAATATAGTTTTAACAAAGTAATATNAAAATGCCATTTGATACAAAATCAATT
TTTCCAGATTTCATAGTGTTCCCATCAGCAATTTCAACCATTGCTATTGGATTATGGAGT
GTCCAAGCATACAAATTAGGTGAAGCTCGTAAAAGATATAATGTAAAAGCACCACATGTA
CAAGGCGACCCAGAATTCGAGAGAATTGCACACGAATATCAAAATACCTCAGAAGCATTG
GGTGCCATTATTCCAGCAACATTTATGTTTTCATATTACATTTCACCAAAATGTTCATTG
TTATTGGGTGGAACTTGGTTAGTAAGTAAAATGTTAAACTGTTGTTCATACTGTTGCAAA
AAGGAAAAAGAAAATGATTGTGCAAAAAATGTTCACACTTGCTTATCCCATATCTCATTC
TTTGCATTATTGGGTGGTTCTGCATTTGGTATTGGTTCATCTCTCTATAACAGATATAAA
TTATAAATATACAAATTCAATTCTTTTTTTTTTTTTTAAAAAAAAAAANAAAGTTATATA
AAACAATAATAAAAATATTAATATTAAAATTTTAATCTTAAACTTAAAAAAAA

qili*f*QSNXKMPFDTKSIFPDFIVFPSAISTIAIGLWSVQAYKLGEARKRYNVKAPHV
QGDPEFERIAHEYQNTSEALGAIIPATFMFSYYISPKCSLLLGGTWLVSKMLNCCSYCCK
KEKENDCAKNVHTCLSHISFFALLGGSAFGIGSSLYNRYKL*iykfnsffff*kkkxsyi
kq**ky*y*nfnlklkk

Frame A:
qili*f*QSNXKMPFDTKSIFPDFIVFPSAISTIAIGLWSVQAYKLGEARKRYNVKAPHV
QGDPEFERIAHEYQNTSEALGAIIPATFMFSYYISPKCSLLLGGTWLVSKMLNCCSYCCK
KEKENDCAKNVHTCLSHISFFALLGGSAFGIGSSLYNRYKL*iykfnsffff*kkkxsyi
kq**ky*y*nfnlklkk


Frame B:
kf*ysfnkvixkchliqnqffqis*cshqqfqpllldygvskhtn*vklvkdim*khhmy
katqnsrelhtnikipqkhwvplfqqhlcfhitfhqnvhcywvelg**vkc*tvvhtvak
rkkkmivqkmftlaypishslhywvvlhlvlvhlsitdinykytnsilffffkkkxkvi*
nnnkninikililnlkk


Frame C:
nfnivltk*yxnai*ykinfsrfhsvpisnfnhcywimecpsiqir*ss*ki*cksttct
rrprirenctriskylrsigchyssniyvfilhftkmfivigwnlvsk*nvkllfillqk
gkrk*lckkcshllipylilciigwfciwywfisl*qi*iiniqiqffffflkkkxklyk
tiikililkf*s*t*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD151 (SSD151Q) /CSM/SS/SSD1-C/SSD151Q.Seq.d/                        700   0.0
SSA270 (SSA270Q) /CSM/SS/SSA2-C/SSA270Q.Seq.d/                        700   0.0
SSE351 (SSE351Q) /CSM/SS/SSE3-C/SSE351Q.Seq.d/                        696   0.0
SSK645 (SSK645Q) /CSM/SS/SSK6-B/SSK645Q.Seq.d/                        686   0.0
SSJ829 (SSJ829Q) /CSM/SS/SSJ8-B/SSJ829Q.Seq.d/                        640   0.0
SSI331 (SSI331Q) /CSM/SS/SSI3-B/SSI331Q.Seq.d/                        640   0.0
SSJ279 (SSJ279Q) /CSM/SS/SSJ2-D/SSJ279Q.Seq.d/                        589   e-167
SSD685 (SSD685Q) /CSM/SS/SSD6-D/SSD685Q.Seq.d/                        543   e-153
SSB358 (SSB358Q) /CSM/SS/SSB3-C/SSB358Q.Seq.d/                        365   e-100
SSB544 (SSB544Q) /CSM/SS/SSB5-B/SSB544Q.Seq.d/                        361   8e-99

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    34  0.13  6
BZ459163|BZ459163.1 BONFQ46TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONFQ46, DNA sequence.    40  0.46  2
AC079349|AC079349.6 Homo sapiens BAC clone RP11-436A7 from 4, complete sequence.    38  0.86  5
AY316241|AY316241.1 Arion lusitanicus isolate 70B NADH dehydrogenase subunit I (ND1) gene, partial cds; mitochondrial gene for mitochondrial product.    40  0.97  2
AY316240|AY316240.1 Arion lusitanicus isolate 70A NADH dehydrogenase subunit I (ND1) gene, partial cds; mitochondrial gene for mitochondrial product.    40  0.97  2
AY316242|AY316242.1 Arion lusitanicus isolate 70C NADH dehydrogenase subunit I (ND1) gene, partial cds; mitochondrial gene for mitochondrial product.    40  0.97  2
AX344569|AX344569.1 Sequence 20 from Patent WO0200932.            44  1.9  1
AC108208|AC108208.4 Homo sapiens BAC clone RP11-395B6 from 4, complete sequence.    44  1.9  1
AP001947|AP001947.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2026H24, WORKING DRAFT SEQUENCE, ordered pieces.    44  1.9  1
BZ350027|BZ350027.1 hr48e06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone hr48e06 5', DNA sequence.    44  1.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001291_862(CP001291|pid:none) Cyanothece sp. PCC 7424, complet...    89   9e-17
BA000045_3057(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    72   9e-12
CP000494_646(CP000494|pid:none) Bradyrhizobium sp. BTAi1, comple...    68   2e-10
CP000250_4660(CP000250|pid:none) Rhodopseudomonas palustris HaA2...    66   8e-10
(P73795) RecName: Full=Uncharacterized protein sll1147;  &BA0000...    66   8e-10
BX572608_166(BX572608|pid:none) Rhodopseudomonas palustris CGA00...    65   1e-09
CP000283_4375(CP000283|pid:none) Rhodopseudomonas palustris BisB...    65   2e-09
CP000633_938(CP000633|pid:none) Agrobacterium vitis S4 chromosom...    63   5e-09
CP000301_77(CP000301|pid:none) Rhodopseudomonas palustris BisB18...    59   8e-08
CP000655_1644(CP000655|pid:none) Polynucleobacter necessarius su...    52   2e-05

 psg: 0.83  gvh: 0.44  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSD151 is cyt

>SSD151E.Seq
CAAATTTTAATATAGTTTTAACAAAGTAATATNAAAATGCCATTTGATACAAAATCAATT
TTTCCAGATTTCATAGTGTTCCCATCAGCAATTTCAACCATTGCTATTGGATTATGGAGT
GTCCAAGCATACAAATTAGGTGAAGCTCGTAAAAGATATAATGTAAAAGCACCACATGTA
CAAGGCGACCCAGAATTCGAGAGAATTGCACACGAATATCAAAATACCTCAGAAGCATTG
GGTGCCATTATTCCAGCAACATTTATGTTTTCATATTACATTTCACCAAAATGTTCATTG
TTATTGGGTGGAACTTGGTTAGTAAGTAAAATGTTAAACTGTTGTTCATACTGTTGCAAA
AAGGAAAAAGAAAATGATTGTGCAAAAAATGTTCACACTTGCTTATCCCATATCTCATTC
TTTGCATTATTGGGTGGTTCTGCATTTGGTATTGGTTCATCTCTCTATAACAGATATAAA
TTATAAATATACAAATTCAATTCTTTTTTTTTTTTTTAAAAAAAAAAANAAAGTTATATA
AAACAATAATAAAAATATTAATATTAAAATTTTAATCTTAAACTTAAAAAAAA