SSD150
Library SS
(Link to library)
Clone ID SSD150
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03801-1
Original site URL
Representative seq. ID SSD150Z
(Link to Original site)
Representative DNA sequence
>SSD150 (SSD150Q) /CSM/SS/SSD1-C/SSD150Q.Seq.d/
XXXXXXXXXXTTTTATTAAATTCTTATTTAAATGGTGCATGTGTTGGTCCACAATCAAAC
GGTTATTTCAATCGTTATCTTTGTAATGGAAATGTTGTAAAACGTTATAATTGCCCATCT
GATTGCCGTAAAGCTTCTGGGGTCAGTGGTTGTGTATTTGATAAAGAATTAAAAAGTATT
TCATCCTGTCCAAATATTAAATCAAAAAATATTCAAGATTTAATTAAAATTGATGGTAAA
GTTGATACTTCAAGTACATCTTCTTCTTCTGGTGCTACTGGTGGTGGTGGTACTGGAAAT
AATGGTACCTCAGCAACTGGTGGTAGTGGAGCAACTGGAGCCGCTTCTGGAAATGGTGGA
GCTACATCAAATGCAGGAAATAGTGGAGGTGCCTCAACTACTGGCAAAAGCAATGCCCAA
AAAATATACGTATCTTTCTTCCTTTTAATTAGTTTATCATTATTAATTTTAATATTATTT
TAAATAAAATAAAAAATAAAAAACTAGTAATATT
sequence update 1997. 9.19
Translated Amino Acid sequence
---LLNSYLNGACVGPQSNGYFNRYLCNGNVVKRYNCPSDCRKASGVSGCVFDKELKSIS
SCPNIKSKNIQDLIKIDGKVDTSSTSSSSGATGGGGTGNNGTSATGGSGATGAASGNGGA
TSNAGNSGGASTTGKSNAQKIYVSFFLLISLSLLILILF*ik*kikn**y


Translated Amino Acid sequence (All Frames)
Frame A:
---fikflfkwcmcwstikrlfqslsl*wkccktl*lpi*lp*sfwgqwlci**rikkyf
ilsky*ikkysrfn*n*w*s*yfkyifffwcywwwwywk*wylsnww*wsnwsrfwkwws
yikcrk*wrclnywqkqcpkniriflpfn*fiiinfniilnkiknkklvi


Frame B:
---LLNSYLNGACVGPQSNGYFNRYLCNGNVVKRYNCPSDCRKASGVSGCVFDKELKSIS
SCPNIKSKNIQDLIKIDGKVDTSSTSSSSGATGGGGTGNNGTSATGGSGATGAASGNGGA
TSNAGNSGGASTTGKSNAQKIYVSFFLLISLSLLILILF*ik*kikn**y


Frame C:
---y*ili*mvhvlvhnqtvisivifvmeml*nviiahliavkllgsvvvylikn*kvfh
pvqilnqkifki*lklmvklilqvhllllvllvvvvleimvpqqlvvveqlepllemvel
hqmqeivevpqllakampkkytylssf*lvyhy*f*yyfk*nkk*ktsni


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFD728 (VFD728Q) /CSM/VF/VFD7-B/VFD728Q.Seq.d/ 932 0.0
SSE208 (SSE208Q) /CSM/SS/SSE2-A/SSE208Q.Seq.d/ 932 0.0
SSD150 (SSD150Q) /CSM/SS/SSD1-C/SSD150Q.Seq.d/ 932 0.0
SSI113 (SSI113Q) /CSM/SS/SSI1-A/SSI113Q.Seq.d/ 924 0.0
SSA380 (SSA380Q) /CSM/SS/SSA3-D/SSA380Q.Seq.d/ 924 0.0
SLK691 (SLK691Q) /CSM/SL/SLK6-D/SLK691Q.Seq.d/ 916 0.0
SSK491 (SSK491Q) /CSM/SS/SSK4-D/SSK491Q.Seq.d/ 914 0.0
SSL642 (SSL642Q) /CSM/SS/SSL6-B/SSL642Q.Seq.d/ 896 0.0
SSA819 (SSA819Q) /CSM/SS/SSA8-A/SSA819Q.Seq.d/ 880 0.0
SLA581 (SLA581Q) /CSM/SL/SLA5-D/SLA581Q.Seq.d/ 761 0.0

own update 2001. 6.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 932 0.0 1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 36 4e-04 10
AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 44 0.001 4
AZ543373|AZ543373.1 ENTEN01TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 40 0.007 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 48 0.008 9
AP001835|AP001835.4 Homo sapiens genomic DNA, chromosome 11q clone:RP11-668M17, complete sequences. 44 0.011 7
AL935202|AL935202.7 Zebrafish DNA sequence from clone CH211-197E11. 52 0.072 2
AL250244|AL250244.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 037C13 of library G from Tetraodon nigroviridis. 48 0.11 1
AF081585|AF081585.1 Dictyostelium discoideum developmental protein DG1110 (DG1110) gene, partial cds. 36 0.22 3
AC144482|AC144482.7 Medicago truncatula clone mth2-10p1, WORKING DRAFT SEQUENCE, 2 ordered pieces. 42 0.34 5
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_51(AC116984|pid:none) Dictyostelium discoideum chromoso... 167 1e-40
CP000875_4584(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 32 9.0

protein update 2009. 1.28
PSORT

psg: 0.82 gvh: 0.39 alm: 0.14 top: 0.40 tms: 0.07 mit: 0.31 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: endoplasmic reticulum
12.0 %: plasma membrane
12.0 %: vesicles of secretory system
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SSD150 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD150Z
3' end seq.
>SSD150Z.Seq
----------TTTTATTAAATTCTTATTTAAATGGTGCATGTGTTGGTCCACAATCAAAC
GGTTATTTCAATCGTTATCTTTGTAATGGAAATGTTGTAAAACGTTATAATTGCCCATCT
GATTGCCGTAAAGCTTCTGGGGTCAGTGGTTGTGTATTTGATAAAGAATTAAAAAGTATT
TCATCCTGTCCAAATATTAAATCAAAAAATATTCAAGATTTAATTAAAATTGATGGTAAA
GTTGATACTTCAAGTACATCTTCTTCTTCTGGTGCTACTGGTGGTGGTGGTACTGGAAAT
AATGGTACCTCAGCAACTGGTGGTAGTGGAGCAACTGGAGCCGCTTCTGGAAATGGTGGA
GCTACATCAAATGCAGGAAATAGTGGAGGTGCCTCAACTACTGGCAAAAGCAATGCCCAA
AAAATATACGTATCTTTCTTCCTTTTAATTAGTTTATCATTATTAATTTTAATATTATTT
TAAATAAAATAAAAAATAAAAAACTAGTAATATT
Length of 3' end seq. 504
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -