SSD149
Library SS
(Link to library)
Clone ID SSD149
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12211-1
Original site URL
Representative seq. ID SSD149P
(Link to Original site)
Representative DNA sequence
>SSD149 (SSD149Q) /CSM/SS/SSD1-C/SSD149Q.Seq.d/
GAAAGAAAGAAAAAAAAAAAAAAATATATATATATTATAAAGATTGTAACAATATTGTGT
AAATTATTATCTTTATTTTCAAACACTTTTTTTTTTTTCAATTAATCTCTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATCAACCAAAACAAATCAAAATCAAAAAAAAAAAATTGT
TCACAAATTTGTGTATGCTTGAAAATTTTTAAAATTTTTTTTTTTTTTTTTTTAAATCTA
TAAAATTTTTTTAAAAAAAAAAGAATGGTTGGAAAAAGAGAAGAAAAGAAAAGTTTGTTA
TCAGATGXXXXXXXXXXGATGCTTCTGATATTATTCTTTTGGAAAAGTCACTCACTGTCA
TTAATACCGCCGTTAGAACTGGTCGTATCACTCATGCCAACACTATTAAATACATTAAGA
TGGCTGCTTCTTCCAATTTTGGTAACGTTTTCTCAATGTTGATTGCATCAGCTTGGCTTC
CATTCATTCCACTTAAACCACTCCAAATGTTAACTCAAAATCTTTTATACGATTTCTCTC
AAATCTCTATCCCTTGGGATAATGTCGATGAAGAATACTTAAAGATCCCACATCCATGGA
GTGTTAGAAGTTTATTCAAATTTATGGTTTTCTTGGGTCCAATTTCCTCAATTTTCGATG
TTGGTATTTTCTCTTACATGTGGTGGTATTTAGGTTGGACTACAGAAGTTACCCAATCAA
GTTTCCAAACTGGTTGGTACGTTGAAGGTCTTATCACTCAAGTTTTCATCGTTCATATGA
TTCGTACCGTTAAAGTACCATTTATTCAACGTTGGGCTTCTTGGCAATTAACTGTTAATA
CCGTAATCATCGCTGCTATTTGTATTGCAATTCCATATACTCCATTAAGTCCATACTTAT
TAATGGAAAAATTACCAGCAATGTATTATCCAGGTCTTGCCAGTACTTTTGTTGGTTATT
TCTTATTAACTCAAATTGTTAAAAAGATTTATATGGCTGTATTTGGTGAATGGTTATAAA
NTCTTTCAAAATCTCAAAAA
sequence update 1998. 9. 9
Translated Amino Acid sequence
kerkkkkniyil*rl*qycvnyylyfqtlfffsinlfkkkkkkkkkkstktnqnqkkkiv
hkfvya*kflkffffff*IYKIFLKKKEWLEKEKKRKVCYQM---

---DASDIILLEKSLTVINTAVRTGRITHANTIKYIKMAASSNFGNVFSMLIASAWLPFI
PLKPLQMLTQNLLYDFSQISIPWDNVDEEYLKIPHPWSVRSLFKFMVFLGPISSIFDVGI
FSYMWWYLGWTTEVTQSSFQTGWYVEGLITQVFIVHMIRTVKVPFIQRWASWQLTVNTVI
IAAICIAIPYTPLSPYLLMEKLPAMYYPGLASTFVGYFLLTQIVKKIYMAVFGEWL*xls
ksqk


Translated Amino Acid sequence (All Frames)
Frame A:
erkkkkkkyiyiikivtilckllslfsntffffn*sl*kkkkkkkkkinqnkskskkknc
sqicvclkifkiffffflnl*nffkkkrmvgkreekksllsd---

---DASDIILLEKSLTVINTAVRTGRITHANTIKYIKMAASSNFGNVFSMLIASAWLPFI
PLKPLQMLTQNLLYDFSQISIPWDNVDEEYLKIPHPWSVRSLFKFMVFLGPISSIFDVGI
FSYMWWYLGWTTEVTQSSFQTGWYVEGLITQVFIVHMIRTVKVPFIQRWASWQLTVNTVI
IAAICIAIPYTPLSPYLLMEKLPAMYYPGLASTFVGYFLLTQIVKKIYMAVFGEWL*xls
ksqk

Frame B:
kerkkkkniyil*rl*qycvnyylyfqtlfffsinlfkkkkkkkkkkstktnqnqkkkiv
hkfvya*kflkffffff*IYKIFLKKKEWLEKEKKRKVCYQM---

---mllilffwkshslslipplelvvslmptllntlrwlllpilvtfsqc*lhqlgfhsf
hlnhskc*lkifytislkslslgimsmknt*rshihgvlevysnlwfswvqfpqfsmlvf
sltcggi*vglqklpnqvsklvgtlkvlslkfssfi*fvplkyhlfnvgllgn*llip*s
sllfvlqfhilh*vhty*wknyqqciiqvlpvlllvisy*lkllkrfiwlylvngykxfq
nlk

Frame C:
kkekkkkiyiyykdcnniv*iiififkhffffqlislkkkkkkkkknqpkqikikkkklf
tnlcmlenf*nffffffksikff*kkkngwkkrrkekfvir---

---cf*yysfgkvthch*yrr*nwsyhscqhy*ih*dgcffqfw*rflnvdcislasihs
t*ttpnvnsksfirflsnlyplg*cr*rilkdptsmec*kfiqiygflgsnflnfrcwyf
llhvvvfrldyrsypikfpnwlvr*rsyhssfhrsydsyr*stiystlgflainc*yrnh
rcylycnsiysiksilingkitsnvlsrscqyfcwlflinsnc*kdlygciw*mvixsfk
isk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD149 (SSD149Q) /CSM/SS/SSD1-C/SSD149Q.Seq.d/ 1477 0.0
VHB851 (VHB851Q) /CSM/VH/VHB8-C/VHB851Q.Seq.d/ 1340 0.0
VHP140 (VHP140Q) /CSM/VH/VHP1-B/VHP140Q.Seq.d/ 1332 0.0
VHA837 (VHA837Q) /CSM/VH/VHA8-B/VHA837Q.Seq.d/ 1320 0.0
AHA653 (AHA653Q) /CSM/AH/AHA6-C/AHA653Q.Seq.d/ 1261 0.0
VHE446 (VHE446Q) /CSM/VH/VHE4-B/VHE446Q.Seq.d/ 1223 0.0
VHK371 (VHK371Q) /CSM/VH/VHK3-C/VHK371Q.Seq.d/ 1207 0.0
VFL730 (VFL730Q) /CSM/VF/VFL7-B/VFL730Q.Seq.d/ 1207 0.0
VFG832 (VFG832Q) /CSM/VF/VFG8-B/VFG832Q.Seq.d/ 1197 0.0
VHA724 (VHA724Q) /CSM/VH/VHA7-A/VHA724Q.Seq.d/ 1130 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE006358|AE006358.1 Lactococcus lactis subsp. lactis IL1403 section 120 of 218 of the complete genome. 54 7e-04 3
AC122545|AC122545.3 Mus musculus clone RP23-324H16, WORKING DRAFT SEQUENCE, 10 unordered pieces. 46 0.093 4
AC135521|AC135521.2 Rattus norvegicus clone CH230-463E17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 38 0.13 6
AP001093|AP001093.5 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-774L13. 46 0.15 2
AL133402|AL133402.10 Human DNA sequence from clone RP5-1077H22 on chromosome 6. Contains a putative novel gene, ESTs, STSs and GSSs. 42 0.15 2
AC011720|AC011720.4 Homo sapiens chromosome 11 clone RP11-131N7 map 11, WORKING DRAFT SEQUENCE, 20 unordered pieces. 46 0.26 2
AL356130|AL356130.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-391F23. 42 0.30 2
AC016970|AC016970.16 Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 42 0.31 3
AP003496|AP003496.1 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1786D2. 40 0.44 4
AW840889|AW840889.1 RC1-CN0008-020300-013-f02_1 CN0008 Homo sapiens cDNA, mRNA sequence. 36 0.46 2
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU928164_4674(CU928164|pid:none) Escherichia coli IAI39 chromoso... 263 6e-69
CP000247_4443(CP000247|pid:none) Escherichia coli 536, complete ... 263 6e-69
U14003_155(U14003|pid:none) Escherichia coli K-12 chromosomal re... 263 7e-69
(P0ABB8) RecName: Full=Magnesium-transporting ATPase, P-type 1; ... 263 7e-69
CU928145_4660(CU928145|pid:none) Escherichia coli 55989 chromoso... 263 7e-69
CP000800_4583(CP000800|pid:none) Escherichia coli E24377A, compl... 263 7e-69
CP000970_4530(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 263 7e-69
CP000036_3899(CP000036|pid:none) Shigella boydii Sb227, complete... 263 7e-69
AE005174_5206(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 263 7e-69
CP000034_3927(CP000034|pid:none) Shigella dysenteriae Sd197, com... 263 7e-69
protein update 2009. 6.10
PSORT

psg: 0.23 gvh: 0.56 alm: 0.28 top: 0.23 tms: 0.20 mit: 0.27 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: nuclear
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SSD149 is pla

5' end seq. ID SSD149F
5' end seq.
>SSD149F.Seq
GAAAGAAAGAAAAAAAAAAAAAAATATATATATATTATAAAGATTGTAACAATATTGTGT
AAATTATTATCTTTATTTTCAAACACTTTTTTTTTTTTCAATTAATCTCTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATCAACCAAAACAAATCAAAATCAAAAAAAAAAAATTGT
TCACAAATTTGTGTATGCTTGAAAATTTTTAAAATTTTTTTTTTTTTTTTTTTAAATCTA
TAAAATTTTTTTAAAAAAAAAAGAATGGTTGGAAAAAGAGAAGAAAAGAAAAGTTTGTTA
TCAGATG----------
Length of 5' end seq. 307
3' end seq. ID SSD149Z
3' end seq.
>SSD149Z.Seq
----------GATGCTTCTGATATTATTCTTTTGGAAAAGTCACTCACTGTCATTAATAC
CGCCGTTAGAACTGGTCGTATCACTCATGCCAACACTATTAAATACATTAAGATGGCTGC
TTCTTCCAATTTTGGTAACGTTTTCTCAATGTTGATTGCATCAGCTTGGCTTCCATTCAT
TCCACTTAAACCACTCCAAATGTTAACTCAAAATCTTTTATACGATTTCTCTCAAATCTC
TATCCCTTGGGATAATGTCGATGAAGAATACTTAAAGATCCCACATCCATGGAGTGTTAG
AAGTTTATTCAAATTTATGGTTTTCTTGGGTCCAATTTCCTCAATTTTCGATGTTGGTAT
TTTCTCTTACATGTGGTGGTATTTAGGTTGGACTACAGAAGTTACCCAATCAAGTTTCCA
AACTGGTTGGTACGTTGAAGGTCTTATCACTCAAGTTTTCATCGTTCATATGATTCGTAC
CGTTAAAGTACCATTTATTCAACGTTGGGCTTCTTGGCAATTAACTGTTAATACCGTAAT
CATCGCTGCTATTTGTATTGCAATTCCATATACTCCATTAAGTCCATACTTATTAATGGA
AAAATTACCAGCAATGTATTATCCAGGTCTTGCCAGTACTTTTGTTGGTTATTTCTTATT
AACTCAAATTGTTAAAAAGATTTATATGGCTGTATTTGGTGAATGGTTATAAANTCTTTC
AAAATCTCAAAAA
Length of 3' end seq. 723
Connected seq. ID SSD149P
Connected seq.
>SSD149P.Seq
GAAAGAAAGAAAAAAAAAAAAAAATATATATATATTATAAAGATTGTAACAATATTGTGT
AAATTATTATCTTTATTTTCAAACACTTTTTTTTTTTTCAATTAATCTCTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATCAACCAAAACAAATCAAAATCAAAAAAAAAAAATTGT
TCACAAATTTGTGTATGCTTGAAAATTTTTAAAATTTTTTTTTTTTTTTTTTTAAATCTA
TAAAATTTTTTTAAAAAAAAAAGAATGGTTGGAAAAAGAGAAGAAAAGAAAAGTTTGTTA
TCAGATG----------GATGCTTCTGATATTATTCTTTTGGAAAAGTCACTCACTGTCA
TTAATACCGCCGTTAGAACTGGTCGTATCACTCATGCCAACACTATTAAATACATTAAGA
TGGCTGCTTCTTCCAATTTTGGTAACGTTTTCTCAATGTTGATTGCATCAGCTTGGCTTC
CATTCATTCCACTTAAACCACTCCAAATGTTAACTCAAAATCTTTTATACGATTTCTCTC
AAATCTCTATCCCTTGGGATAATGTCGATGAAGAATACTTAAAGATCCCACATCCATGGA
GTGTTAGAAGTTTATTCAAATTTATGGTTTTCTTGGGTCCAATTTCCTCAATTTTCGATG
TTGGTATTTTCTCTTACATGTGGTGGTATTTAGGTTGGACTACAGAAGTTACCCAATCAA
GTTTCCAAACTGGTTGGTACGTTGAAGGTCTTATCACTCAAGTTTTCATCGTTCATATGA
TTCGTACCGTTAAAGTACCATTTATTCAACGTTGGGCTTCTTGGCAATTAACTGTTAATA
CCGTAATCATCGCTGCTATTTGTATTGCAATTCCATATACTCCATTAAGTCCATACTTAT
TAATGGAAAAATTACCAGCAATGTATTATCCAGGTCTTGCCAGTACTTTTGTTGGTTATT
TCTTATTAACTCAAATTGTTAAAAAGATTTATATGGCTGTATTTGGTGAATGGTTATAAA
NTCTTTCAAAATCTCAAAAA
Length of connected seq. 1030
Full length Seq ID -
Full length Seq. -
Length of full length seq. -