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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD146
Library SS
(Link to library)
Clone ID SSD146
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12243-1
Original site URL
Representative seq. ID SSD146E
(Link to Original site)
Representative DNA sequence 
>SSD146 (SSD146Q) /CSM/SS/SSD1-B/SSD146Q.Seq.d/
AGAAAATCGACAACAAATAATATATTAATACAGGACACAATATAAAAACAAATACAAAAA
TATAAATAGAAAATATACACAAATAAAATATAAGATTATTGTAAATTATAAATTAATAAT
TAAATAAATAGAAAGAGATACATATAAATATATAAATATAAATATAAATAAAATGGAAGA
AGATAAACAATATATACTATTAATTGGTGATAGTGATGTTGGTAAAACATCAATTGTAAA
AAGATTTTCAGATGATACATTTGACGAAGATTTATTATGTACAATTGGTGTAGAATTTAA
AATGAAAGAAGTTAAAGTCGATGGTAAAAAAGTAGATTTATGTATCTGGGATACTGCAGG
ACAAGAGAAATTTAGAGCACTTATTTCATCATATTATAGAGGTGCACATGGTATTATATT
AACATATGACGTTACAAAAAGAGAATCATTTGATAATTTAAATTATTGGTTGAATGAAGT
TGAAAATTTTGCAAATCGTAGTAATTTAGTTAAACTTTTAGTGGGTAATAAAATAGATAA
AGAGAATAGAGAAGTCACCAGAGAAGAGGGTGCAGAATTTGCAAAGAAAAAAGCAATGCT
TTTCATTGAATGTAGTGCAAAATCAAAGATTGGTATTCAACAAGCATTTGAAGAATTGGC
TCAAAAAATTATAGAAATCCCTCAAAATACATCTTCATCACAACCAAAACAAAGAAATAC
TGGTAGTGTTAAAGTTGAAGATGAACCTGATCATAATCAAGGTGTTTGTAGTTGTTAAAA
ATAATTTAATTAATATATATATATAAATA
sequence update 1999. 4. 5
Translated Amino Acid sequence 
enrqqiiy*yrtqyknkykninrkytqikykiivnykliik*IERDTYKYINININKMEE
DKQYILLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAG
QEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKIDK
ENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIPQNTSSSQPKQRNT
GSVKVEDEPDHNQGVCSC*k*fn*yiyin
Translated Amino Acid sequence (All Frames) 
Frame A:
rksttnniliqdti*kqiqkyk*kiytnki*dyckl*inn*inrkryi*iykykyk*ngr
r*tiytinw***cw*ninckkifr*yi*rrfimynwcri*ners*srw*ksrfmylgycr
trei*styfiil*rctwyyini*rykkrii**fkllve*s*kfcks**fs*tfsg**nr*
re*rshqrrgcrickeksnafh*m*ckikdwystsi*rigsknyrnpskyifittktkky
w*c*s*r*t*s*srcl*llkii*liyiyk


Frame B:
enrqqiiy*yrtqyknkykninrkytqikykiivnykliik*IERDTYKYINININKMEE
DKQYILLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAG
QEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKIDK
ENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIPQNTSSSQPKQRNT
GSVKVEDEPDHNQGVCSC*k*fn*yiyin


Frame C:
kidnk*yintghniktntki*ienihk*nirll*iin**lnk*keihini*i*i*ikwkk
inniyy*lvivmlvkhql*kdfqmihltkiyyvqlv*nlk*kklksmvkk*iyvsgilqd
krnlehlfhhiievhmvly*hmtlqkenhlii*iig*mklkilqivvi*lnf*wvik*ik
riekspekrvqnlqrkkqcfslnvvqnqrlvfnkhlknwlkkl*kslkihlhhnqnkeil
vvlklkmnliiikvfvvvknnliniyi*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD146 (SSD146Q) /CSM/SS/SSD1-B/SSD146Q.Seq.d/                       1225   0.0
VFC510 (VFC510Q) /CSM/VF/VFC5-A/VFC510Q.Seq.d/                         70   6e-11
SSM886 (SSM886Q) /CSM/SS/SSM8-D/SSM886Q.Seq.d/                         70   6e-11
SSM603 (SSM603Q) /CSM/SS/SSM6-A/SSM603Q.Seq.d/                         70   6e-11
SSL855 (SSL855Q) /CSM/SS/SSL8-C/SSL855Q.Seq.d/                         70   6e-11
SSL682 (SSL682Q) /CSM/SS/SSL6-D/SSL682Q.Seq.d/                         70   6e-11
SSL623 (SSL623Q) /CSM/SS/SSL6-A/SSL623Q.Seq.d/                         70   6e-11
SSI475 (SSI475Q) /CSM/SS/SSI4-D/SSI475Q.Seq.d/                         70   6e-11
SSH594 (SSH594Q) /CSM/SS/SSH5-D/SSH594Q.Seq.d/                         70   6e-11
SSE547 (SSE547Q) /CSM/SS/SSE5-B/SSE547Q.Seq.d/                         70   6e-11
own update 2001. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L21010|L21010.1 Dictyostelium discoideum Rab1B mRNA, 3' end of cds.    42  2e-09  4
BQ596061|BQ596061.1 PfESToab28g07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAB7_CANFA P18067 RAS-RELATED PROTEIN RAB-7. [1] ;, mRNA sequence.    42  9e-07  3
BU497602|BU497602.1 PfESToab81g05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAB7_CANFA P18067 RAS-RELATED PROTEIN RAB-7. [1] ;, mRNA sequence.    42  2e-06  3
BQ451194|BQ451194.1 PfESToab04h10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAB7_CANFA P18067 RAS-RELATED PROTEIN RAB-7. [1] ;, mRNA sequence.    42  2e-06  3
L21009|L21009.1 Dictyostelium discoideum Rab1A mRNA, complete cds.    64  3e-06  1
AJ290938|AJ290938.2 Plasmodium falciparum mRNA for putative rab7 GTPase (rab7 gene).    42  3e-06  3
BI549388|BI549388.1 603190043F1 NIH_MGC_95 Homo sapiens cDNA clone IMAGE:5261194 5', mRNA sequence.    44  1e-05  3
BQ807471|BQ807471.1 NISC_kk04e08.y2 NCI_CGAP_Brn72 Macaca mulatta cDNA clone IMAGE:5330415 5', mRNA sequence.    44  2e-05  3
BM397781|BM397781.1 5009-0-36-H11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    38  1e-04  3
AW792245|AW792245.1 D01089-R Lambda Zap, Stratagene Blumeria graminis f. sp. hordei cDNA clone D01089 similar to ras-related protein rab-1a, mRNA sequence.    48  8e-04  2
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GY8) RecName: Full=Ras-related protein Rab-18;                    399   e-110
(Q6DHC1) RecName: Full=Ras-related protein Rab-18-B;  &BC076054_...   220   5e-56
(Q5ZLG1) RecName: Full=Ras-related protein Rab-18;  &AJ719773_1(...   219   1e-55
(Q5EB77) RecName: Full=Ras-related protein Rab-18;  &BC089957_1(...   216   5e-55
BC043996_1(BC043996|pid:none) Xenopus laevis similar to RAB18, m...   216   7e-55
BC074233_1(BC074233|pid:none) Xenopus laevis similar to RAB18, m...   215   2e-54
(Q0IIG8) RecName: Full=Ras-related protein Rab-18;  &BC122650_1(...   214   3e-54
(Q5R5H5) RecName: Full=Ras-related protein Rab-18;  &(Q9NP72) Re...   213   5e-54
AK223153_1(AK223153|pid:none) Homo sapiens mRNA for RAB18, membe...   213   8e-54
BT044659_1(BT044659|pid:none) Salmo salar clone ssal-rgf-002-097...   211   2e-53
protein update 2009. 7. 6
PSORT 

 psg: 0.60  gvh: 0.37  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.50  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSD146 is cyt
5' end seq. ID SSD146F
5' end seq. 
>SSD146F.Seq
AGAAAATCGACAACAAATAATATATTAATACAGGACACAATATAAAAACAAATACAAAAA
TATAAATAGAAAATATACACAAATAAAATATAAGATTATTGTAAATTATAAATTAATAAT
TAAATAAATAGAAAGAGATACATATAAATATATAAATATAAATATAAATAAAATGGAAGA
AGATAAACAATATAAAGTACTATTAATTGGTGATAGTGATGTTGGTAAAACATCAATTGT
AAAAAGATTTTCAGATGATACATTTGACGAAGATTTATTATGTACAATTGGTGTAGAATT
TAAAATGAAAGAAGTTAAAGTCGATGGTAAAAAAGTAGATTTATGTATCTGGGATACTGC
AGGACAAGAGAAATTTAGAGCACTTATTTCATCATATTATAGAGGTGCACATGGTATTAT
ATTAACATATGACGTTACAAAAAGAGAATCATTTGATAATTTAAATTATTGGTTGAATGA
AGTTGAAAATTTTGCAAATCGTAGTAATTTAGTTAAACTTTTAGTGGGTAATAAAATAGA
TAAAGAGAATAGAGAAGTCACCAGAGAAGAGGGTGCAGAATTTGCAAAGAAAAAAGCAAT
GCTTTTCATTGAATGTAGTGCAAAATCAAAGATTGGTATTCAACAAGCATTTGAAGAATT
GGCTCAAAAAATTATAGAAATCCCTCAAAATACATCTTCATCACAACCAAAACAAAGAAA
TACTGGTAGTGTTAAAGTTGAAGATGAACCTGATCATAATCAAGGTGTTTGTAGTTGTTA
AAAATAATTTAATTAATATATATATATAAATA
Length of 5' end seq. 812
3' end seq. ID SSD146Z
3' end seq. 
>SSD146Z.Seq
----------TACTATTAATTGGTGATAGTGATGTTGGTAAAACATCAATTGTAAAAAGA
TTTTCAGATGATACATTTGACGAAGATTTATTATGTACAATTGGTGTAGAATTTAAAATG
AAAGAAGTTAAAGTCGATGGTAAAAAAGTAGATTTATGTATCTGGGATACTGCAGGACAA
GAGAAATTTAGAGCACTTATTTCATCATATTATAGAGGTGCACATGGTATTATATTAACA
TATGACGTTACAAAAAGAGAATCATTTGATAATTTAAATTATTGGTTGAATGAAGTTGAA
AATTTTGCAAATCGTAGTAATTTAGTTAAACTTTTAGTGGGTAATAAAATAGATAAAGAG
AATAGAGAAGTCACCAGAGAAGAGGGTGCAGAATTTGCAAAGAAAAAAGCAATGCTTTTC
ATTGAATGTAGTGCAAAATCAAAGATTGGTATTCAACAAGCATTTGAAGAATTGGCTCAA
AAAATTATAGAAATCCCTCAAAATACATCTTCATCACAACCAAAACAAAGAAATACTGGT
AGTGTTAAAGTTGAAGATGAACCTGATCATAATCAAGGTGTTTGTAGTTGTTAAAAATAA
TTTAATTAATATATATATATAAATA
Length of 3' end seq. 615
Connected seq. ID SSD146P
Connected seq. 
>SSD146P.Seq
AGAAAATCGACAACAAATAATATATTAATACAGGACACAATATAAAAACAAATACAAAAA
TATAAATAGAAAATATACACAAATAAAATATAAGATTATTGTAAATTATAAATTAATAAT
TAAATAAATAGAAAGAGATACATATAAATATATAAATATAAATATAAATAAAATGGAAGA
AGATAAACAATATAAAGTACTATTAATTGGTGATAGTGATGTTGGTAAAACATCAATTGT
AAAAAGATTTTCAGATGATACATTTGACGAAGATTTATTATGTACAATTGGTGTAGAATT
TAAAATGAAAGAAGTTAAAGTCGATGGTAAAAAAGTAGATTTATGTATCTGGGATACTGC
AGGACAAGAGAAATTTAGAGCACTTATTTCATCATATTATAGAGGTGCACATGGTATTAT
ATTAACATATGACGTTACAAAAAGAGAATCATTTGATAATTTAAATTATTGGTTGAATGA
AGTTGAAAATTTTGCAAATCGTAGTAATTTAGTTAAACTTTTAGTGGGTAATAAAATAGA
TAAAGAGAATAGAGAAGTCACCAGAGAAGAGGGTGCAGAATTTGCAAAGAAAAAAGCAAT
GCTTTTCATTGAATGTAGTGCAAAATCAAAGATTGGTATTCAACAAGCATTTGAAGAATT
GGCTCAAAAAATTATAGAAATCCCTCAAAATACATCTTCATCACAACCAAAACAAAGAAA
TACTGGTAGTGTTAAAGTTGAAGATGAACCTGATCATAATCAAGGTGTTTGTAGTTGTTA
AAAATAATTTAATTAATATATATATATAAATA----------TACTATTAATTGGTGATA
GTGATGTTGGTAAAACATCAATTGTAAAAAGATTTTCAGATGATACATTTGACGAAGATT
TATTATGTACAATTGGTGTAGAATTTAAAATGAAAGAAGTTAAAGTCGATGGTAAAAAAG
TAGATTTATGTATCTGGGATACTGCAGGACAAGAGAAATTTAGAGCACTTATTTCATCAT
ATTATAGAGGTGCACATGGTATTATATTAACATATGACGTTACAAAAAGAGAATCATTTG
ATAATTTAAATTATTGGTTGAATGAAGTTGAAAATTTTGCAAATCGTAGTAATTTAGTTA
AACTTTTAGTGGGTAATAAAATAGATAAAGAGAATAGAGAAGTCACCAGAGAAGAGGGTG
CAGAATTTGCAAAGAAAAAAGCAATGCTTTTCATTGAATGTAGTGCAAAATCAAAGATTG
GTATTCAACAAGCATTTGAAGAATTGGCTCAAAAAATTATAGAAATCCCTCAAAATACAT
CTTCATCACAACCAAAACAAAGAAATACTGGTAGTGTTAAAGTTGAAGATGAACCTGATC
ATAATCAAGGTGTTTGTAGTTGTTAAAAATAATTTAATTAATATATATATATAAATA
Length of connected seq. 1427
Full length Seq ID SSD146E
Full length Seq. 
>SSD146E.Seq
AGAAAATCGACAACAAATAATATATTAATACAGGACACAATATAAAAACAAATACAAAAA
TATAAATAGAAAATATACACAAATAAAATATAAGATTATTGTAAATTATAAATTAATAAT
TAAATAAATAGAAAGAGATACATATAAATATATAAATATAAATATAAATAAAATGGAAGA
AGATAAACAATATATACTATTAATTGGTGATAGTGATGTTGGTAAAACATCAATTGTAAA
AAGATTTTCAGATGATACATTTGACGAAGATTTATTATGTACAATTGGTGTAGAATTTAA
AATGAAAGAAGTTAAAGTCGATGGTAAAAAAGTAGATTTATGTATCTGGGATACTGCAGG
ACAAGAGAAATTTAGAGCACTTATTTCATCATATTATAGAGGTGCACATGGTATTATATT
AACATATGACGTTACAAAAAGAGAATCATTTGATAATTTAAATTATTGGTTGAATGAAGT
TGAAAATTTTGCAAATCGTAGTAATTTAGTTAAACTTTTAGTGGGTAATAAAATAGATAA
AGAGAATAGAGAAGTCACCAGAGAAGAGGGTGCAGAATTTGCAAAGAAAAAAGCAATGCT
TTTCATTGAATGTAGTGCAAAATCAAAGATTGGTATTCAACAAGCATTTGAAGAATTGGC
TCAAAAAATTATAGAAATCCCTCAAAATACATCTTCATCACAACCAAAACAAAGAAATAC
TGGTAGTGTTAAAGTTGAAGATGAACCTGATCATAATCAAGGTGTTTGTAGTTGTTAAAA
ATAATTTAATTAATATATATATATAAATA
Length of full length seq. 809