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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD141
Library SS
(Link to library)
Clone ID SSD141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13950-1
Original site URL
Representative seq. ID SSD141P
(Link to Original site)
Representative DNA sequence 
>SSD141 (SSD141Q) /CSM/SS/SSD1-B/SSD141Q.Seq.d/
AATTGATACAGCCTATTTTACAGGTAATTATCCACCACATGCATCAATTGAAGCACTTTG
TGATGATAGTGATCCAAATTTCAACACATTGAAAGAATCAAATAATTGGGAAGTAATTTT
AAACAAATCCGATCTTGGCTCATCATGTAAAAAGTATTTTGAGTGTAAAGTTGAAAAACG
TTTCACTCATATTAAATTTAGAATTTATCCAGATGGTGGTGTTGCAAGATTACGTGCCTA
CGGTAGGGTTGTTAAGGATTGGACATTAGTGATTCCAGGTGAATTGGTTGATTTGGCTGC
CATTGAAAATGGAGGTTTAGTAACTCAAGTAAGTGACCATTTCTATGGCAATAAAAACAA
TATCATCATGCCAGGTCGTTCAGTGAACATGGGTGATGGTTGGGAAACCAAGAGAAGAAG
AGGTCCAGGAAATGATTGGTTAACTGTAAAATTAGCAAAAGAAGGTATTGTCAAAAGAAT
TGAAGTCGACACCAATTGGTTCAAAGGCAATTTCCCAACATCTTGTTCAATCGATGCCAT
TCATTCAAGTTCTGCTCCAGATGAAACTCATCTTCAAGATTATGAATGXXXXXXXXXXAT
AATAATAATAATAATAATAATAATAATACCAGTAATAGTTTTAAAACCTCAGATAGACAA
CAATAAAATAATTAATTTTTTTTTTTTTAAGAAAATAAAAAAAAATAAAAAAAAAAAATA
AAAAAATTAAAACTTCCAAAA
sequence update 1998. 9. 9
Translated Amino Acid sequence 
IDTAYFTGNYPPHASIEALCDDSDPNFNTLKESNNWEVILNKSDLGSSCKKYFECKVEKR
FTHIKFRIYPDGGVARLRAYGRVVKDWTLVIPGELVDLAAIENGGLVTQVSDHFYGNKNN
IIMPGRSVNMGDGWETKRRRGPGNDWLTVKLAKEGIVKRIEVDTNWFKGNFPTSCSIDAI
HSSSAPDETHLQDYE---

---IIIIIIIIIIPVIVLKPQIDNNKIINFFFFKKIKKNKKKK*kn*nfq
Translated Amino Acid sequence (All Frames) 
Frame A:
n*yslfyr*lsttcin*stl****skfqhierik*lgsnfkqirswlim*kvf*v*s*kt
fhsy*i*nlsrwwcckitclr*gc*gldisdsr*ig*fgch*kwrfsnssk*pflwq*kq
yhharsfsehg*wlgnqekkrsrk*lvnckiskrrycqkn*srhqlvqrqfpnilfnrch
sfkfcsr*nsssrl*m---

---IIIIIIIIIIPVIVLKPQIDNNKIINFFFFKKIKKNKKKK*kn*nfq

Frame B:
IDTAYFTGNYPPHASIEALCDDSDPNFNTLKESNNWEVILNKSDLGSSCKKYFECKVEKR
FTHIKFRIYPDGGVARLRAYGRVVKDWTLVIPGELVDLAAIENGGLVTQVSDHFYGNKNN
IIMPGRSVNMGDGWETKRRRGPGNDWLTVKLAKEGIVKRIEVDTNWFKGNFPTSCSIDAI
HSSSAPDETHLQDYE---

---*********yq**f*nlr*ttik*liffflrk*kkikkknkkiktsk

Frame C:
liqpilqviihhmhqlkhfvmiviqisth*knqiigk*f*tnpilahhvksilsvklknv
slilnlefiqmvvlqdyvptvgllrigh**fqvnwliwlplkmev**lk*vtismaikti
sscqvvq*twvmvgkpreeevqemig*l*n*qkkvlskelkstpigskaisqhlvqsmpf
iqvllqmklifkimn---

---nnnnnnnnntsnsfktsdrqq*nn*ffff*enkkk*kkkikklklpk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD141 (SSD141Q) /CSM/SS/SSD1-B/SSD141Q.Seq.d/                       1166   0.0
VSC259 (VSC259Q) /CSM/VS/VSC2-C/VSC259Q.Seq.d/                        460   e-128
CFI505 (CFI505Q) /CSM/CF/CFI5-A/CFI505Q.Seq.d/                        418   e-116
SHC286 (SHC286Q) /CSM/SH/SHC2-D/SHC286Q.Seq.d/                        400   e-110
SFJ720 (SFJ720Q) /CSM/SF/SFJ7-A/SFJ720Q.Seq.d/                        341   9e-93
SFK338 (SFK338Q) /CSM/SF/SFK3-B/SFK338Q.Seq.d/                        327   1e-88
VSH632 (VSH632Q) /CSM/VS/VSH6-B/VSH632Q.Seq.d/                        278   1e-73
SSM168 (SSM168Q) /CSM/SS/SSM1-C/SSM168Q.Seq.d/                        264   2e-69
VFE449 (VFE449Q) /CSM/VF/VFE4-C/VFE449Q.Seq.d/                        198   9e-50
SFF401 (SFF401Q) /CSM/SF/SFF4-A/SFF401Q.Seq.d/                        101   1e-20
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC110445|AC110445.6 Rattus norvegicus clone CH230-326G6, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    50  0.66  2
AC100869|AC100869.1 Homo sapiens chromosome 8 clone RP11-325O18 map 8, LOW-PASS SEQUENCE SAMPLING.    42  0.79  2
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    36  1.2  6
BX005306|BX005306.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-78C7.    44  2.1  3
AJ522226|AJ522226.1 Arabidopsis thaliana T-DNA flanking sequence, left border, clone  287F08.    34  2.3  2
AJ522280|AJ522280.1 Arabidopsis thaliana T-DNA flanking sequence, left border, clone  288E10.    34  2.4  2
AZ532190|AZ532190.1 ENTBW24TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  2.4  1
AZ531402|AZ531402.1 ENTCE77TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  2.4  1
X67678|X67678.1 S.intermedius nuc gene for thermonuclease.        44  2.4  1
Z67998|Z67998.1 S.pombe chromosome I cosmid c1F7.                 44  2.4  1
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000378_162(CP000378|pid:none) Burkholderia cenocepacia AU 1054...   196   8e-49
AM746676_5884(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   190   4e-47
CP000086_1191(CP000086|pid:none) Burkholderia thailandensis E264...   190   4e-47
CP000572_3410(CP000572|pid:none) Burkholderia pseudomallei 1106a...   189   1e-46
CP000440_538(CP000440|pid:none) Burkholderia ambifaria AMMD chro...   189   1e-46
(Q62H14) RecName: Full=Probable allantoicase 2;          EC=3.5....   189   1e-46
CP000526_372(CP000526|pid:none) Burkholderia mallei SAVP1 chromo...   189   1e-46
CP001025_562(CP001025|pid:none) Burkholderia ambifaria MC40-6 ch...   188   1e-46
CP000614_599(CP000614|pid:none) Burkholderia vietnamiensis G4 ch...   187   3e-46
CP000614_1861(CP000614|pid:none) Burkholderia vietnamiensis G4 c...   186   6e-46
protein update 2009. 6.10
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.09  top: 0.80  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSD141 is cyt
5' end seq. ID SSD141F
5' end seq. 
>SSD141F.Seq
AATTGATACAGCCTATTTTACAGGTAATTATCCACCACATGCATCAATTGAAGCACTTTG
TGATGATAGTGATCCAAATTTCAACACATTGAAAGAATCAAATAATTGGGAAGTAATTTT
AAACAAATCCGATCTTGGCTCATCATGTAAAAAGTATTTTGAGTGTAAAGTTGAAAAACG
TTTCACTCATATTAAATTTAGAATTTATCCAGATGGTGGTGTTGCAAGATTACGTGCCTA
CGGTAGGGTTGTTAAGGATTGGACATTAGTGATTCCAGGTGAATTGGTTGATTTGGCTGC
CATTGAAAATGGAGGTTTAGTAACTCAAGTAAGTGACCATTTCTATGGCAATAAAAACAA
TATCATCATGCCAGGTCGTTCAGTGAACATGGGTGATGGTTGGGAAACCAAGAGAAGAAG
AGGTCCAGGAAATGATTGGTTAACTGTAAAATTAGCAAAAGAAGGTATTGTCAAAAGAAT
TGAAGTCGACACCAATTGGTTCAAAGGCAATTTCCCAACATCTTGTTCAATCGATGCCAT
TCATTCAAGTTCTGCTCCAGATGAAACTCATCTTCAAGATTATGAATG----------
Length of 5' end seq. 588
3' end seq. ID SSD141Z
3' end seq. 
>SSD141Z.Seq
----------ATAATAATAATAATAATAATAATAATAATACCAGTAATAGTTTTAAAACC
TCAGATAGACAACAATAAAATAATTAATTTTTTTTTTTTTAAGAAAATAAAAAAAAATAA
AAAAAAAAAATAAAAAAATTAAAACTTCCAAAA
Length of 3' end seq. 143
Connected seq. ID SSD141P
Connected seq. 
>SSD141P.Seq
AATTGATACAGCCTATTTTACAGGTAATTATCCACCACATGCATCAATTGAAGCACTTTG
TGATGATAGTGATCCAAATTTCAACACATTGAAAGAATCAAATAATTGGGAAGTAATTTT
AAACAAATCCGATCTTGGCTCATCATGTAAAAAGTATTTTGAGTGTAAAGTTGAAAAACG
TTTCACTCATATTAAATTTAGAATTTATCCAGATGGTGGTGTTGCAAGATTACGTGCCTA
CGGTAGGGTTGTTAAGGATTGGACATTAGTGATTCCAGGTGAATTGGTTGATTTGGCTGC
CATTGAAAATGGAGGTTTAGTAACTCAAGTAAGTGACCATTTCTATGGCAATAAAAACAA
TATCATCATGCCAGGTCGTTCAGTGAACATGGGTGATGGTTGGGAAACCAAGAGAAGAAG
AGGTCCAGGAAATGATTGGTTAACTGTAAAATTAGCAAAAGAAGGTATTGTCAAAAGAAT
TGAAGTCGACACCAATTGGTTCAAAGGCAATTTCCCAACATCTTGTTCAATCGATGCCAT
TCATTCAAGTTCTGCTCCAGATGAAACTCATCTTCAAGATTATGAATG----------AT
AATAATAATAATAATAATAATAATAATACCAGTAATAGTTTTAAAACCTCAGATAGACAA
CAATAAAATAATTAATTTTTTTTTTTTTAAGAAAATAAAAAAAAATAAAAAAAAAAAATA
AAAAAATTAAAACTTCCAAAA
Length of connected seq. 731
Full length Seq ID -
Full length Seq. -
Length of full length seq. -