>SSD132 (SSD132Q) /CSM/SS/SSD1-B/SSD132Q.Seq.d/
XXXXXXXXXXGGATATGTTTGTTTACGATCTCAATGGGATTCAGTCACAGGATGTTGTTT
TGGTGGAAATAAAACTAGCACTACAACTAACAATAATAAACATTTTAGAGATGATGATGA
TGATGATAATGATAATGATGAAGGTAATCAAAAAACTACCAATAATAAAAATAGAGGTGA
TAATGAAAATCAAATAGAAAACGAAGAAATAGGTGTACAAAGATTTACATGCTCAAGATG
TTTAGGTGGTGAAGTTTCAGATTGTTGTGATTCTTATGAATTTTGTATTTCATGTTGTAT
GAGACAAGACAAAGTTTCAATACTGCATGATACATTAATTAATTTCGCTGAAAAGAATTT
AGATAAGAAATATTTAAAGAATCAATTCGACCTTTGTTCAATGGCATGCAGAACTTCTTC
CGCCTCTTTAGTGAATCAACGTGAATACCAAGATCCAGAATTTAAATTTTGTTATTCTTC
AAAAATACCTCAACCTTTTAATTTGTAATTTAGTCTTAAAATATTAATAATATTATTAAG
GTTCAAAAATAAGAATTTGGACTTTTAAATAAAAAAATAAAAAATAAAAATAAATTTTTT
TTCAGTTGTAAAAAAAA

---YVCLRSQWDSVTGCCFGGNKTSTTTNNNKHFRDDDDDDNDNDEGNQKTTNNKNRGDN
ENQIENEEIGVQRFTCSRCLGGEVSDCCDSYEFCISCCMRQDKVSILHDTLINFAEKNLD
KKYLKNQFDLCSMACRTSSASLVNQREYQDPEFKFCYSSKIPQPFNL*fslkiliillrf
knknldf*ikk*kikinffsvvkk

Frame A:
---dmfvydlngiqsqdvvlveiklalqltiinilemmmmmimimmkvikklpiikievi
mkik*ktkk*vykdlhaqdv*vvkfqivvilmnfvfhvv*dktkfqycmih*lislkri*
irni*rinstfvqwhaellppl**invntkiqnlnfvilqkylnllicnlvlky**yy*g
skiriwtfk*knkk*k*iffql*kk


Frame B:
---iclftismgfshrmlfwwk*n*hyn*q**tf*r**********r*sknyq**k*r**
*ksnrkrrnrctkiymlkmfrw*sfrll*fl*ilyfmlyetrqsfnta*yin*fr*kefr
*eifkesirplfngmqnffrlfsest*iprsri*illffkntstf*fvi*s*ninniikv
qk*efgllnkkiknknkfffsckk


Frame C:
---YVCLRSQWDSVTGCCFGGNKTSTTTNNNKHFRDDDDDDNDNDEGNQKTTNNKNRGDN
ENQIENEEIGVQRFTCSRCLGGEVSDCCDSYEFCISCCMRQDKVSILHDTLINFAEKNLD
KKYLKNQFDLCSMACRTSSASLVNQREYQDPEFKFCYSSKIPQPFNL*fslkiliillrf
knknldf*ikk*kikinffsvvkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD132 (SSD132Q) /CSM/SS/SSD1-B/SSD132Q.Seq.d/                        841   0.0
SSH157 (SSH157Q) /CSM/SS/SSH1-C/SSH157Q.Seq.d/                        753   0.0
SSB879 (SSB879Q) /CSM/SS/SSB8-D/SSB879Q.Seq.d/                        694   0.0
VHH293 (VHH293Q) /CSM/VH/VHH2-D/VHH293Q.Seq.d/                         40   0.039
SSI248 (SSI248Q) /CSM/SS/SSI2-B/SSI248Q.Seq.d/                         40   0.039
SSD667 (SSD667Q) /CSM/SS/SSD6-C/SSD667Q.Seq.d/                         40   0.039
SFL101 (SFL101Q) /CSM/SF/SFL1-A/SFL101Q.Seq.d/                         40   0.039
SHJ559 (SHJ559Q) /CSM/SH/SHJ5-C/SHJ559Q.Seq.d/                         38   0.15
SHA236 (SHA236Q) /CSM/SH/SHA2-B/SHA236Q.Seq.d/                         38   0.15
CHR890 (CHR890Q) /CSM/CH/CHR8-D/CHR890Q.Seq.d/                         38   0.15

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   841  0.0  2
AX458543|AX458543.1 Sequence 89 from Patent WO0246454.            38  0.059  3
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    34  0.077  8
AC079079|AC079079.3 Homo sapiens chromosome 6 clone RP11-106M1, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  0.080  3
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38  0.10  8
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    38  0.12  6
BQ515038|BQ515038.1 EST622453 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIP71 3' end, mRNA sequence.    48  0.13  1
BQ515037|BQ515037.1 EST622452 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIP71 5' end, mRNA sequence.    48  0.13  1
V00696|V00696.1 Yeast (S. cerevisiae) mitochondrial gene fo...    42  0.13  3
AC008347|AC008347.2 Drosophila melanogaster, chromosome 2R, region 57A-57A, BAC clone BACR03N16, complete sequence.    34  0.20  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8BTG6) RecName: Full=UPF0454 protein C12orf49 homolog; Flags: ...    70   6e-11
DQ440326_1(DQ440326|pid:none) Aedes aegypti clone AET-4200 uncha...    69   1e-10
AX119201_1(AX119201|pid:none) Sequence 365 from Patent WO0129221.      67   5e-10
(Q6GNT2) RecName: Full=UPF0454 protein C12orf49 homolog; Flags: ...    63   7e-09
EF146532_1(EF146532|pid:none) Populus trichocarpa clone WS0118_P...    61   2e-08
AE014298_2266(AE014298|pid:none) Drosophila melanogaster chromos...    60   6e-08
BT055363_1(BT055363|pid:none) Zea mays full-length cDNA clone ZM...    59   8e-08
EU959033_1(EU959033|pid:none) Zea mays clone 209401 hypothetical...    59   1e-07
CU571177_4(CU571177|pid:none) Zebrafish DNA sequence from clone ...    53   8e-06
AM457163_1(AM457163|pid:none) Vitis vinifera contig VV78X267599....    51   3e-05

 psg: 0.90  gvh: 0.50  alm: 0.51  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSD132 is nuc

>SSD132Z.Seq
----------GGATATGTTTGTTTACGATCTCAATGGGATTCAGTCACAGGATGTTGTTT
TGGTGGAAATAAAACTAGCACTACAACTAACAATAATAAACATTTTAGAGATGATGATGA
TGATGATAATGATAATGATGAAGGTAATCAAAAAACTACCAATAATAAAAATAGAGGTGA
TAATGAAAATCAAATAGAAAACGAAGAAATAGGTGTACAAAGATTTACATGCTCAAGATG
TTTAGGTGGTGAAGTTTCAGATTGTTGTGATTCTTATGAATTTTGTATTTCATGTTGTAT
GAGACAAGACAAAGTTTCAATACTGCATGATACATTAATTAATTTCGCTGAAAAGAATTT
AGATAAGAAATATTTAAAGAATCAATTCGACCTTTGTTCAATGGCATGCAGAACTTCTTC
CGCCTCTTTAGTGAATCAACGTGAATACCAAGATCCAGAATTTAAATTTTGTTATTCTTC
AAAAATACCTCAACCTTTTAATTTGTAATTTAGTCTTAAAATATTAATAATATTATTAAG
GTTCAAAAATAAGAATTTGGACTTTTAAATAAAAAAATAAAAAATAAAAATAAATTTTTT
TTCAGTTGTAAAAAAAA