SSD131
Library SS
(Link to library)
Clone ID SSD131
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14714-1
Original site URL
Representative seq. ID SSD131Z
(Link to Original site)
Representative DNA sequence
>SSD131 (SSD131Q) /CSM/SS/SSD1-B/SSD131Q.Seq.d/
XXXXXXXXXXCCTAAATCAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCCTGG
AATGTTAAAGAATAAAGTACCATTAAAGAGAGTATCAATTCTNTCGTCAGTTTATTTAGC
AGCAATTTTAGAGTATTTAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAAT
TCAATCTAAAGAATATCACAATGTAAGAAGAATTTCACCACGTCATTTACTTTTAGCAAT
TAAAACTGATGAAGAATTAGATAATTTAATTNNNGTTTCAACAACAATTGCTGGTGGTGG
TGTCATCCCATACATTCATGAAGTTTTGAAAAAGGTTGAACAAAAACCAACTCATCCACA
ACAAAAACAAACAATTAAATCAATTTAAAAATTATAATAAAGAATAATTTTTAAAAAAAA
AAAAAAAAAAAAAAA
sequence update 1997. 9.19
Translated Amino Acid sequence
---KSTKAGLIFPVGRIPGMLKNKVPLKRVSILSSVYLAAILEYLASEVLELTISQVSIQ
SKEYHNVRRISPRHLLLAIKTDEELDNLIXVSTTIAGGGVIPYIHEVLKKVEQKPTHPQQ
KQTIKSI*kl**riifkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---lnqlkqv*fsqlveflec*rikyh*reyqfxrqfi*qqf*si*hqry*n*pshkfqf
nlknitm*eefhhviyf*qlklmkn*ii*xxfqqqllvvvsshtfmkf*krlnknqlihn
knkqlnqfknynke*flkkkkkkk


Frame B:
---*in*srfdfpsw*nswnvke*stikesinsxvslfssnfrvfsirgirinhltsfns
i*risqckknfttsftfsn*n**rir*fnxxfnnncwwwchpihs*sfekg*tktnsstt
ktnn*inlkiiiknnf*kkkkkkk


Frame C:
---KSTKAGLIFPVGRIPGMLKNKVPLKRVSILSSVYLAAILEYLASEVLELTISQVSIQ
SKEYHNVRRISPRHLLLAIKTDEELDNLIXVSTTIAGGGVIPYIHEVLKKVEQKPTHPQQ
KQTIKSI*kl**riifkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD131 (SSD131Q) /CSM/SS/SSD1-B/SSD131Q.Seq.d/ 664 0.0
SSF313 (SSF313Q) /CSM/SS/SSF3-A/SSF313Q.Seq.d/ 636 0.0
VSD703 (VSD703Q) /CSM/VS/VSD7-A/VSD703Q.Seq.d/ 615 e-175
VHJ628 (VHJ628Q) /CSM/VH/VHJ6-B/VHJ628Q.Seq.d/ 502 e-141
VFO624 (VFO624Q) /CSM/VF/VFO6-A/VFO624Q.Seq.d/ 40 0.027
VFK237 (VFK237Q) /CSM/VF/VFK2-B/VFK237Q.Seq.d/ 40 0.027
VFJ888 (VFJ888Q) /CSM/VF/VFJ8-D/VFJ888Q.Seq.d/ 40 0.027
VFA754 (VFA754Q) /CSM/VF/VFA7-C/VFA754Q.Seq.d/ 40 0.027
SSC206 (SSC206Q) /CSM/SS/SSC2-A/SSC206Q.Seq.d/ 40 0.027
AFN641 (AFN641Q) /CSM/AF/AFN6-B/AFN641Q.Seq.d/ 40 0.027

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BF298113|BF298113.1 060PbD12 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 52 3e-07 3
BF298182|BF298182.1 061PbD05 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 52 3e-07 3
BF298763|BF298763.1 021PbB05 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence. 52 3e-07 3
BF295739|BF295739.1 027PbF11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 46 1e-05 3
BI813979|BI813979.1 PfESToaa20f04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O97320 O97320 PFC0920W PROTEIN. ;, mRNA sequence. 52 6e-05 2
BM161402|BM161402.1 EST563925 PyBS Plasmodium yoelii yoelii cDNA clone PYCKE40 5' end, mRNA sequence. 50 6e-05 3
BM170310|BM170310.1 EST572833 PyBS Plasmodium yoelii yoelii cDNA clone PYCQE42 5' end, mRNA sequence. 50 6e-05 3
BM170256|BM170256.1 EST572779 PyBS Plasmodium yoelii yoelii cDNA clone PYCQD67 5' end, mRNA sequence. 50 8e-05 3
BM166835|BM166835.1 EST569358 PyBS Plasmodium yoelii yoelii cDNA clone PYCNY21 5' end, mRNA sequence. 50 8e-05 3
AI784534|AI784534.1 ta01d05.x1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone IMAGE:2042793 3' similar to gb:M37583 HISTONE H2A.Z (HUMAN);, mRNA sequence. 56 4e-04 1
dna update 2003. 7.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X06725_1(X06725|pid:none) Tetrahymena macronucleus mRNA for hist... 102 4e-21
(P70094) RecName: Full=Histone H2A.Z-like; Short=H2A.Zl... 98 1e-19
FB854219_1(FB854219|pid:none) Sequence 73492 from Patent WO20080... 98 1e-19
(P08991) RecName: Full=Histone H2A.V; AltName: Full=H2A.F/Z; Fla... 97 1e-19
BT081892_1(BT081892|pid:none) Rana catesbeiana clone rcat-evr-53... 97 2e-19
(P08985) RecName: Full=Histone H2A.v; AltName: Full=H2A.F/Z; ... 97 2e-19
CR954202_17(CR954202|pid:none) Ostreococcus tauri strain OTTH059... 96 3e-19
EF086143_1(EF086143|pid:none) Picea sitchensis clone WS0291_L11 ... 96 5e-19
CR940348_344(CR940348|pid:none) Theileria annulata strain Ankara... 96 5e-19
AM294366_1(AM294366|pid:none) Drosophila melanogaster CG5499 gen... 95 7e-19
protein update 2009. 6.10
PSORT

psg: 0.92 gvh: 0.49 alm: 0.33 top: 0.67 tms: 0.00 mit: 0.36 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
24.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for SSD131 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD131Z
3' end seq.
>SSD131Z.Seq
----------CCTAAATCAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCCTGG
AATGTTAAAGAATAAAGTACCATTAAAGAGAGTATCAATTCTNTCGTCAGTTTATTTAGC
AGCAATTTTAGAGTATTTAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAAT
TCAATCTAAAGAATATCACAATGTAAGAAGAATTTCACCACGTCATTTACTTTTAGCAAT
TAAAACTGATGAAGAATTAGATAATTTAATTNNNGTTTCAACAACAATTGCTGGTGGTGG
TGTCATCCCATACATTCATGAAGTTTTGAAAAAGGTTGAACAAAAACCAACTCATCCACA
ACAAAAACAAACAATTAAATCAATTTAAAAATTATAATAAAGAATAATTTTTAAAAAAAA
AAAAAAAAAAAAAAA
Length of 3' end seq. 425
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -