SSD115
Library SS
(Link to library)
Clone ID SSD115
Atlas ID
NBRP ID
dictyBase ID
Link to Contig Contig-U04798-1
Original site URL
Representative seq. ID SSD115E
(Link to Original site)
Representative DNA sequence
>SSD115 (SSD115Q) /CSM/SS/SSD1-A/SSD115Q.Seq.d/
ATTAAATTAAAAAAAAATATATTTTTATTCGTTAACCTTTAGTTTCTTAAAGTAAAATTA
TAAATTAGATTAATCATGGGTGCAAAGGAACATTTCATGCCATCAGCAATTCCATCTTTG
GAAAAGAATGTTATGATTATATGTGGTATTTTAGATTTCTTCTTTTTTGGTGTTGGTACA
ATTATTTTAGGTGCTCTCGATGACTGTAATGTTTGGTGTGTTCTCATTGGTGTTTTACAA
TTATGTTTACCATTCGTTGGTTGGTTCTGGTCCATCATTTGGGGTGTTTTAATTCTCTTA
AAAGNNTTNGGTTNAATTATTATTATTATTATAAACTTCATTTACATATAATTACCTTAA
ACTCCATCATCTCTGTTTGTGATGGTTTTTTTTAAAAAAAAAAAATAAAAAAAAAAAATA
ATAAAAAAAAAGAAATGTATTTATTTTAAAAAAAAAAAAAAAAAAAATAAANTAAAAATA
TATTTCCGTGTGATTATTAA
sequence update 1997. 9.10
Translated Amino Acid sequence
iklkkniflfvnl*flkvkl*IRLIMGAKEHFMPSAIPSLEKNVMIICGILDFFFFGVGT
IILGALDDCNVWCVLIGVLQLCLPFVGWFWSIIWGVLILLKXXGXIIIIIINFIYI*lp*
tpsslfvmvffkkkk*kkkiikkkkciyfkkkkkknkxkiyfrvii


Translated Amino Acid sequence (All Frames)
Frame A:
iklkkniflfvnl*flkvkl*IRLIMGAKEHFMPSAIPSLEKNVMIICGILDFFFFGVGT
IILGALDDCNVWCVLIGVLQLCLPFVGWFWSIIWGVLILLKXXGXIIIIIINFIYI*lp*
tpsslfvmvffkkkk*kkkiikkkkciyfkkkkkknkxkiyfrvii


Frame B:
ln*kkiyfysltfsflk*nykld*swvqrnischqqfhlwkrml*lyvvf*issflvlvq
lf*vlsmtvmfgvfslvfynyvyhslvgsgpsfgvf*fs*kxxvxlllll*tsftynylk
lhhlcl*wfflkkknkkkk**kkrnvfilkkkkkkix*kyisv*ll


Frame C:
*ikkkyifir*plvs*skiin*inhgckgtfhaisnsifgkecydymwyfrfllfwcwyn
yfrcsr*l*clvcshwcftimftirwlvlvhhlgcfnslkxxxxnyyyyyklhlhiitln
siisvcdgff*kkkikkknnkkkemylf*kkkkkk*xknifpcdy*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI547 (VSI547Q) /CSM/VS/VSI5-B/VSI547Q.Seq.d/ 569 e-161
VSH433 (VSH433Q) /CSM/VS/VSH4-B/VSH433Q.Seq.d/ 569 e-161
VSC836 (VSC836Q) /CSM/VS/VSC8-B/VSC836Q.Seq.d/ 569 e-161
VSA114 (VSA114Q) /CSM/VS/VSA1-A/VSA114Q.Seq.d/ 569 e-161
SSL126 (SSL126Q) /CSM/SS/SSL1-B/SSL126Q.Seq.d/ 569 e-161
SSD115 (SSD115Q) /CSM/SS/SSD1-A/SSD115Q.Seq.d/ 569 e-161
SSM183 (SSM183Q) /CSM/SS/SSM1-D/SSM183Q.Seq.d/ 553 e-157
SSF439 (SSF439Q) /CSM/SS/SSF4-B/SSF439Q.Seq.d/ 531 e-150
SSL285 (SSL285Q) /CSM/SS/SSL2-D/SSL285Q.Seq.d/ 105 6e-22
VSK263 (VSK263Q) /CSM/VS/VSK2-C/VSK263Q.Seq.d/ 36 0.49

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC119614|AC119614.7 Rattus norvegicus clone CH230-480I14, *** SEQUENCING IN PROGRESS ***. 38 0.41 3
AP001426|AP001426.2 Homo sapiens genomic DNA, chromosome 21q22.2, LB7T-ERG region, clone:S479. 44 1.6 1
AC011280|AC011280.3 Homo sapiens clone RP11-13K8, WORKING DRAFT SEQUENCE, 6 unordered pieces. 44 1.6 1
AP000163|AP000163.1 Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 15/16. 44 1.6 1
AL359635|AL359635.11 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-61C22. 44 1.6 1
BH352807|BH352807.1 CH230-81K7.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-81K7, DNA sequence. 44 1.6 1
AQ056324|AQ056324.1 CIT-HSP-2342H16.TF CIT-HSP Homo sapiens genomic clone 2342H16, genomic survey sequence. 44 1.6 1
AZ749653|AZ749653.1 RPCI-24-101L1.TJ RPCI-24 Mus musculus genomic clone RPCI-24-101L1, DNA sequence. 44 1.6 1
AC027099|AC027099.2 Homo sapiens chromosome 5 clone RP11-122N15 map 5, WORKING DRAFT SEQUENCE, 27 unordered pieces. 44 1.6 1
CC239611|CC239611.1 CH261-120A23_RM1.1 CH261 Gallus gallus genomic clone CH261-120A23, DNA sequence. 44 1.6 1
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AL008970_13(AL008970|pid:none) Plasmodium falciparum MAL3P4. &A... 67 2e-10
AM910990_289(AM910990|pid:none) Plasmodium knowlesi strain H chr... 67 2e-10
(P16537) RecName: Full=Protein SPEC3; &A43696(A43696) 47 2e-04
CP000589_85(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ... 38 0.12
AY883861_2(AY883861|pid:none) Sterkiella histriomuscorum spec3-l... 37 0.34
(Q0VBF8) RecName: Full=Uncharacterized membrane protein C1orf95 ... 35 0.75
BC134608_1(BC134608|pid:none) Bos taurus hypothetical LOC614962,... 35 0.99
(P0AAF1) RecName: Full=Putrescine-ornithine antiporter; AltName:... 35 0.99
CU928158_2329(CU928158|pid:none) Escherichia fergusonii ATCC 354... 35 0.99
CP000970_686(CP000970|pid:none) Escherichia coli SMS-3-5, comple... 35 0.99
protein update 2009. 3. 5
PSORT

psg: 0.89 gvh: 0.49 alm: 0.23 top: 0.47 tms: 0.20 mit: 0.24 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSD115 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSD115E
Full length Seq.
>SSD115E.Seq
ATTAAATTAAAAAAAAATATATTTTTATTCGTTAACCTTTAGTTTCTTAAAGTAAAATTA
TAAATTAGATTAATCATGGGTGCAAAGGAACATTTCATGCCATCAGCAATTCCATCTTTG
GAAAAGAATGTTATGATTATATGTGGTATTTTAGATTTCTTCTTTTTTGGTGTTGGTACA
ATTATTTTAGGTGCTCTCGATGACTGTAATGTTTGGTGTGTTCTCATTGGTGTTTTACAA
TTATGTTTACCATTCGTTGGTTGGTTCTGGTCCATCATTTGGGGTGTTTTAATTCTCTTA
AAAGNNTTNGGTTNAATTATTATTATTATTATAAACTTCATTTACATATAATTACCTTAA
ACTCCATCATCTCTGTTTGTGATGGTTTTTTTTAAAAAAAAAAAATAAAAAAAAAAAATA
ATAAAAAAAAAGAAATGTATTTATTTTAAAAAAAAAAAAAAAAAAAATAAANTAAAAATA
TATTTCCGTGTGATTATTAA
Length of full length seq. 500