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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD114
Library SS
(Link to library)
Clone ID SSD114
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04780-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SSD114 (SSD114Q) /CSM/SS/SSD1-A/SSD114Q.Seq.d/
ATTACTATAAACAATTATAATAATGACAAAAAAAATCTTATTTTAGGATTGACTGGTAGT
GTGGCTACAATTAAGCTAAATTATTAGTTGAACAATTGATTCAACATTTTAATTTAATTG
TAATACCAACAGAAACTTCTTTAAAATTCTTATCAGATCAAGACTTTGAATTTATTTCTT
CAAAATGTNAAATATATAAAGATAAAGATGAATGGGAAAATGTAGATTTATTAAAAAGAA
GTGCTCTTCATATTGATTTAAGAAATTGGGCAAATTCAATATTAATATCACCATGTTCAG
CAAATACANTTGGTAAAATTTCAAATGGGTTATGTGATAATTTATTAACTTCATTAATTA
GGGCATGGGATTATAAGAATAAATCCATGATTTTAGCACCCGCAATGAATACTATGATGT
GGGAGAATCCATTCACTTTTAAACATATTGAAACTTTAAAATCAATTTCTCCAAATGTTT
TTATAATTGATCCAATTGAAAAGAAATTATTTTGTGGTGATATTGGTATGGGTGCTGGGT
GCAATGGAACAAGTACCTAAAATCGTTGATTTTACAATAAATAATTTAAAATAAAAAAAA
AA
sequence update 1999. 4. 5
Translated Amino Acid sequence 
yykql***qkksyfridw*cgyn*AKLLVEQLIQHFNLIVIPTETSLKFLSDQDFEFISS
KCXIYKDKDEWENVDLLKRSALHIDLRNWANSILISPCSANTXGKISNGLCDNLLTSLIR
AWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKKLFCGDIGMGAGC
NGTST*nr*fynk*fkikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
itinnynndkknlilgltgsvatiklny*lnn*fnili*l*yqqkll*nsyqiktlnlfl
qnvkyikikmngkm*iy*kevlfili*eigqiqy*yhhvqqixlvkfqmgyviiy*lh*l
ghgiirinp*f*hpq*il*cgrihsllnilkl*nqflqmfl*liqlkrnyfvvilvwvlg
ameqvpkivdftinnlk*kk


Frame B:
ll*tiiimtkkilf*d*lvvwlqls*iis*tidstf*fncntnrnffkilirsrl*iyff
kmxni*r*r*mgkcrfikkkcssy*fkklgkfninitmfskyxw*nfkwvm**finfin*
gmgl*e*ihdfstrneyydvgesihf*ty*nfkinfskcfyn*sn*keiilw*ywygcwv
qwnkylkslilq*ii*nkkk


Frame C:
yykql***qkksyfridw*cgyn*AKLLVEQLIQHFNLIVIPTETSLKFLSDQDFEFISS
KCXIYKDKDEWENVDLLKRSALHIDLRNWANSILISPCSANTXGKISNGLCDNLLTSLIR
AWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKKLFCGDIGMGAGC
NGTST*nr*fynk*fkikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD114 (SSD114Q) /CSM/SS/SSD1-A/SSD114Q.Seq.d/                       1114   0.0
SSC816 (SSC816Q) /CSM/SS/SSC8-A/SSC816Q.Seq.d/                       1035   0.0
SSJ365 (SSJ365Q) /CSM/SS/SSJ3-C/SSJ365Q.Seq.d/                       1017   0.0
SSL109 (SSL109Q) /CSM/SS/SSL1-A/SSL109Q.Seq.d/                         38   0.15
SSF769 (SSF769Q) /CSM/SS/SSF7-C/SSF769Q.Seq.d/                         38   0.15
SSA355 (SSA355Q) /CSM/SS/SSA3-C/SSA355Q.Seq.d/                         38   0.15
SFL110 (SFL110Q) /CSM/SF/SFL1-A/SFL110Q.Seq.d/                         38   0.15
CHC844 (CHC844Q) /CSM/CH/CHC8-B/CHC844Q.Seq.d/                         38   0.15
CFJ457 (CFJ457Q) /CSM/CF/CFJ4-C/CFJ457Q.Seq.d/                         38   0.15
AFJ159 (AFJ159Q) /CSM/AF/AFJ1-C/AFJ159Q.Seq.d/                         38   0.15
own update 2004. 8. 8
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL408072|AL408072.1 T3 end of clone AV0AA006D04 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    46  3e-04  3
X88900|X88900.1 C.tropicalis HAL3 gene.                           40  4e-04  2
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36  6e-04  12
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence.    36  0.003  10
BF250165|BF250165.1 pa89g05.y1 Hawdon Ancylostoma caninum L3 Ancylostoma caninum cDNA 5' similar to TR:P91988 P91988 F25H9.6 PROTEIN. [1] ;, mRNA sequence.    52  0.008  1
BQ667109|BQ667109.1 pb52e06.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to TR:P91988 P91988 F25H9.6 PROTEIN. [1] ;, mRNA sequence.    52  0.008  1
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    40  0.009  8
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    40  0.022  9
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P4.    36  0.023  10
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    36  0.029  6
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF198100_114(AF198100|pid:none) Fowlpox virus, complete genome. ...   141   1e-32
(Q9UTI7) RecName: Full=Probable thymidylate synthase;          S...   135   1e-30
(Q9SWE5) RecName: Full=Phosphopantothenoylcysteine decarboxylase...   135   1e-30
AY318871_141(AY318871|pid:none) Canarypox virus strain ATCC VR-1...   132   7e-30
AC020889_24(AC020889|pid:none) Genomic sequence for Arabidopsis ...   132   1e-29
BT036798_1(BT036798|pid:none) Zea mays full-length cDNA clone ZM...   132   1e-29
(P94063) RecName: Full=Probable phosphopantothenoylcysteine deca...   132   1e-29
BT034899_1(BT034899|pid:none) Zea mays full-length cDNA clone ZM...   131   2e-29
CR382131_271(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   126   4e-28
CP000584_160(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   125   1e-27
protein update 2009. 7. 6
PSORT 

 psg: 0.87  gvh: 0.35  alm: 0.41  top: 0.50  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SSD114 is cyt
5' end seq. ID SSD114F
5' end seq. 
>SSD114F.Seq
ATTACTATAAACAATTATAATAATGACAAAAAAAATCTTATTTTAGGATTGACTGGTAGT
GTGGCTACAATTAAAGCTAAATTATTAGTTGAACAATTGATTCAACATTTTAATTTAATT
GTAATACCAACAGAAACTTCTTTAAAATTCTTATCAGATCAAGACTTTGAATTTATTTCT
TCAAAATGTAAAATATATAAAGATAAAGATGAATGGGAAAATGTAGATTTATTAAAAAGA
AGTGCTCTTCATATTGATTTAAGAAATTGGGCAAATTCAATATTAATATCACCATGTTCA
GCAAATACACTTGGTAAAATTTCAAATGGGTTATGTGATAATTTATTAACTTCATTAATT
AGGGCATGGGATTATAAGAATAAATCCATGATTTTAGCACCCGCAATGAATACTATGATG
TGGGAGAATCCATTCACTTTTAAACATATTGAAACTTTAAAATCAATTTCTCCAAATGTT
TTTATAATTGATCCAATTGAAAAGAAATTATTTTGTGGTGATATTGGTATGGGTGC----
------
Length of 5' end seq. 536
3' end seq. ID SSD114Z
3' end seq. 
>SSD114Z.Seq
----------AAGCTAAATTATTAGTTGAACAATTGATTCAACATTTTAATTTAATTGTA
ATACCAACAGAAACTTCTTTAAAATTCTTATCAGATCAAGACTTTGAATTTATTTCTTCA
AAATGTGAAATATATAAAGATAAAGATGAATGGGAAAATGTAGATTTATTAAAAAGAAGT
GCTCTTCATATTGATTTAAGAAATTGGGCAAATTCAATATTAATATCACCATGTTCAGCA
AATACAATTGGTAAAATTTCAAATGGGTTATGTGATAATTTATTAACTTCATTAATTAGG
GCATGGGATTATAAGAATAAATCCATGATTTTAGCACCCGCAATGNNTACTATGATGTGG
GAGAATCCANTCACTTTTAAACATATTGAAACTTTAAAATCAATTTCTCCAAATGTTTTT
ATAATTGATCCAATTGAAAAGAAATTATTTTGTGGTGATATTGGTATGGGTGCAATGGAA
CAAGTACCTAAAATCGTTGATTTTACAATAAATAATTTAAAATAAAAAAAAAANAAAAAA
AA
Length of 3' end seq. 532
Connected seq. ID SSD114P
Connected seq. 
>SSD114P.Seq
ATTACTATAAACAATTATAATAATGACAAAAAAAATCTTATTTTAGGATTGACTGGTAGT
GTGGCTACAATTAAAGCTAAATTATTAGTTGAACAATTGATTCAACATTTTAATTTAATT
GTAATACCAACAGAAACTTCTTTAAAATTCTTATCAGATCAAGACTTTGAATTTATTTCT
TCAAAATGTAAAATATATAAAGATAAAGATGAATGGGAAAATGTAGATTTATTAAAAAGA
AGTGCTCTTCATATTGATTTAAGAAATTGGGCAAATTCAATATTAATATCACCATGTTCA
GCAAATACACTTGGTAAAATTTCAAATGGGTTATGTGATAATTTATTAACTTCATTAATT
AGGGCATGGGATTATAAGAATAAATCCATGATTTTAGCACCCGCAATGAATACTATGATG
TGGGAGAATCCATTCACTTTTAAACATATTGAAACTTTAAAATCAATTTCTCCAAATGTT
TTTATAATTGATCCAATTGAAAAGAAATTATTTTGTGGTGATATTGGTATGGGTGC----
------AAGCTAAATTATTAGTTGAACAATTGATTCAACATTTTAATTTAATTGTAATAC
CAACAGAAACTTCTTTAAAATTCTTATCAGATCAAGACTTTGAATTTATTTCTTCAAAAT
GTGAAATATATAAAGATAAAGATGAATGGGAAAATGTAGATTTATTAAAAAGAAGTGCTC
TTCATATTGATTTAAGAAATTGGGCAAATTCAATATTAATATCACCATGTTCAGCAAATA
CAATTGGTAAAATTTCAAATGGGTTATGTGATAATTTATTAACTTCATTAATTAGGGCAT
GGGATTATAAGAATAAATCCATGATTTTAGCACCCGCAATGNNTACTATGATGTGGGAGA
ATCCANTCACTTTTAAACATATTGAAACTTTAAAATCAATTTCTCCAAATGTTTTTATAA
TTGATCCAATTGAAAAGAAATTATTTTGTGGTGATATTGGTATGGGTGCAATGGAACAAG
TACCTAAAATCGTTGATTTTACAATAAATAATTTAAAATAAAAAAAAAANAAAAAAAA
Length of connected seq. 1068
Full length Seq ID SSD114E
Full length Seq. 
>SSD114E.Seq
ATTACTATAAACAATTATAATAATGACAAAAAAAATCTTATTTTAGGATTGACTGGTAGT
GTGGCTACAATTAAGCTAAATTATTAGTTGAACAATTGATTCAACATTTTAATTTAATTG
TAATACCAACAGAAACTTCTTTAAAATTCTTATCAGATCAAGACTTTGAATTTATTTCTT
CAAAATGTNAAATATATAAAGATAAAGATGAATGGGAAAATGTAGATTTATTAAAAAGAA
GTGCTCTTCATATTGATTTAAGAAATTGGGCAAATTCAATATTAATATCACCATGTTCAG
CAAATACANTTGGTAAAATTTCAAATGGGTTATGTGATAATTTATTAACTTCATTAATTA
GGGCATGGGATTATAAGAATAAATCCATGATTTTAGCACCCGCAATGAATACTATGATGT
GGGAGAATCCATTCACTTTTAAACATATTGAAACTTTAAAATCAATTTCTCCAAATGTTT
TTATAATTGATCCAATTGAAAAGAAATTATTTTGTGGTGATATTGGTATGGGTGCTGGGT
GCAATGGAACAAGTACCTAAAATCGTTGATTTTACAATAAATAATTTAAAATAAAAAAAA
AAN
Length of full length seq. 603