>SSD113 (SSD113Q) /CSM/SS/SSD1-A/SSD113Q.Seq.d/
XXXXXXXXXXTTTTATTAGTTGGCCATAGTTATGGCGGTTCTGTTATNACTGGTGCTGGT
AATCATGATAAAGTTGTTGGTTTAGTTTACATTGCCGCATTTGCTCCCGATGAAGGTGAT
AGTTTATTTGGTATTTTCAGCAGAAGAGAACAACCAAGTGGCGGTGCAAATATTTTACCA
GCAGATAAAAAAGGATTCCTTTGGATTNACTATGATAAATTTCCAGAATCGTTTTGTCAA
GATTTGCCCAAAGATGATGCTATGGTATTGTCAATTTCTCAAAAACCAATTCACTCAAAT
GGATTCTCTGNTAAATTAAACTGTAAACCAGCATGGAGAACCAAACCAAGTTGGTACCAA
GTTTCAAATAATGATAATATGATTCCACCTGAAACTGAACTTGAAATGGCAAAATANNTA
AATGCAAAGAAAATAATACATCTAAATGCTTCACATGCTTCACTTGCATCACATCCAAAA
GAAGTTTTTTCANTAATCACAGAAGCTGCCAATTCTTTAAATTCAA

---LLVGHSYGGSVXTGAGNHDKVVGLVYIAAFAPDEGDSLFGIFSRREQPSGGANILPA
DKKGFLWIXYDKFPESFCQDLPKDDAMVLSISQKPIHSNGFSXKLNCKPAWRTKPSWYQV
SNNDNMIPPETELEMAKXXNAKKIIHLNASHASLASHPKEVFSXITEAANSLNS

Frame A:
---fiswp*lwrfcyxwcw*s**scwfslhcricsr*r**fiwyfqqkrttkwrckyfts
r*kripldxl**isrivlsrfaqr*cygivnfsktnslkwilx*ikl*tsmenqtklvps
fk***ydst*n*t*ngkixkckenntskcftcftcitskrsffxnhrscqffkf


Frame B:
---LLVGHSYGGSVXTGAGNHDKVVGLVYIAAFAPDEGDSLFGIFSRREQPSGGANILPA
DKKGFLWIXYDKFPESFCQDLPKDDAMVLSISQKPIHSNGFSXKLNCKPAWRTKPSWYQV
SNNDNMIPPETELEMAKXXNAKKIIHLNASHASLASHPKEVFSXITEAANSLNS


Frame C:
---y*laivmavllxlvlvimikllv*ftlphllpmkvivylvfsaeennqvavqifyqq
ikkdsfgxtminfqnrfvkicpkmmlwycqflknqftqmdslxn*tvnqhgepnqvgtkf
qimii*fhlklnlkwqnx*mqrk*yi*mlhmlhlhhiqkkffx*sqklpil*iq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD113 (SSD113Q) /CSM/SS/SSD1-A/SSD113Q.Seq.d/                        987   0.0
SSK385 (SSK385Q) /CSM/SS/SSK3-D/SSK385Q.Seq.d/                        971   0.0
SSK111 (SSK111Q) /CSM/SS/SSK1-A/SSK111Q.Seq.d/                        971   0.0
SSE527 (SSE527Q) /CSM/SS/SSE5-B/SSE527Q.Seq.d/                        971   0.0
SSC807 (SSC807Q) /CSM/SS/SSC8-A/SSC807Q.Seq.d/                        971   0.0
SLB866 (SLB866Q) /CSM/SL/SLB8-C/SLB866Q.Seq.d/                        971   0.0
SSC654 (SSC654Q) /CSM/SS/SSC6-C/SSC654Q.Seq.d/                        959   0.0
CHO442 (CHO442Q) /CSM/CH/CHO4-B/CHO442Q.Seq.d/                        938   0.0
SLF275 (SLF275Q) /CSM/SL/SLF2-D/SLF275Q.Seq.d/                        898   0.0
CHI583 (CHI583Q) /CSM/CH/CHI5-D/CHI583Q.Seq.d/                        876   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL161532|AL161532.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32.    44  0.25  4
AC122836|AC122836.4 Mus musculus chromosome 7 clone RP23-188B13, complete sequence.    44  0.32  2
AZ693037|AZ693037.1 ENTHP79TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  0.39  2
D71864|D71864.1 C.elegans cDNA clone yk82h1 : 3' end, single read.    46  0.43  1
D71880|D71880.1 C.elegans cDNA clone yk83b9 : 3' end, single read.    46  0.43  1
D71203|D71203.1 C.elegans cDNA clone yk63f1 : 3' end, single read.    46  0.43  1
D72202|D72202.1 C.elegans cDNA clone yk91c9 : 3' end, single read.    46  0.43  1
BX088600|BX088600.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  1.7  1
BT005740|0    44  1.7  1
AY080679|AY080679.1 Arabidopsis thaliana unknown protein (At4g11560) mRNA, complete cds.    44  1.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM286415_2692(AM286415|pid:none) Yersinia enterocolitica subsp. ...   172   3e-42
CP000744_2439(CP000744|pid:none) Pseudomonas aeruginosa PA7, com...   167   1e-40
CP000076_2829(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c...   166   2e-40
AY658153_1(AY658153|pid:none) Synthetic construct Peudomonas aer...   166   4e-40
CP001111_1500(CP001111|pid:none) Stenotrophomonas maltophilia R5...   157   2e-37
CP000631_166(CP000631|pid:none) Agrobacterium radiobacter K84 pl...   155   4e-37
CP000740_267(CP000740|pid:none) Sinorhizobium medicae WSM419 pla...   130   2e-29
AE003851_33(AE003851|pid:none) Xylella fastidiosa 9a5c plasmid p...   127   2e-28
AP009552_1975(AP009552|pid:none) Microcystis aeruginosa NIES-843...   126   3e-28
CP000133_2378(CP000133|pid:none) Rhizobium etli CFN 42, complete...   125   5e-28

 psg: 0.85  gvh: 0.42  alm: 0.47  top: 0.47  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSD113 is cyt

>SSD113Z.Seq
----------TTTTATTAGTTGGCCATAGTTATGGCGGTTCTGTTATNACTGGTGCTGGT
AATCATGATAAAGTTGTTGGTTTAGTTTACATTGCCGCATTTGCTCCCGATGAAGGTGAT
AGTTTATTTGGTATTTTCAGCAGAAGAGAACAACCAAGTGGCGGTGCAAATATTTTACCA
GCAGATAAAAAAGGATTCCTTTGGATTNACTATGATAAATTTCCAGAATCGTTTTGTCAA
GATTTGCCCAAAGATGATGCTATGGTATTGTCAATTTCTCAAAAACCAATTCACTCAAAT
GGATTCTCTGNTAAATTAAACTGTAAACCAGCATGGAGAACCAAACCAAGTTGGTACCAA
GTTTCAAATAATGATAATATGATTCCACCTGAAACTGAACTTGAAATGGCAAAATANNTA
AATGCAAAGAAAATAATACATCTAAATGCTTCACATGCTTCACTTGCATCACATCCAAAA
GAAGTTTTTTCANTAATCACAGAAGCTGCCAATTCTTTAAATTCAA