SSC890
Library SS
(Link to library)
Clone ID SSC890
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16277-1
Original site URL
Representative seq. ID SSC890E
(Link to Original site)
Representative DNA sequence
>SSC890 (SSC890Q) /CSM/SS/SSC8-D/SSC890Q.Seq.d/
CATCAATGGACTCTTTTAATAGCATAAAGAGATGGTTAATCGATGTTGATAGATTCGCAA
GTCCATCAGTTTTAAAATTAATAGTTGGTAATAAATGTGATCTCAATTCAAAGAGAGCCG
TTGATTTTAAGATTGCAAAGAAATTTGCAGATGAATTAAATATACCAATAATGGAAACTA
GCGCAAAAGAATCAACTGCAATTGATGAAGCATTCATTAAATTAGCTTCTGACATTAAAA
AGAGTACTCCACAAAAATAAAAACTTTTTTAAAAAAAATCAAACAAACAAAAAATCAAAC
AAAACAGTTAATAACAAATAACAAAAAAAAAANNAAAAAAAAAAAAAAAAAAAACAAAAA
AAAAAAAAACAAAAAAACAAAAAACAATATAAAATAACAAAATAACTTAATAAAAATTAA
TAATATCATTTGTTTTTATTTTTTATTAAAT
sequence update 1998. 1.25
Translated Amino Acid sequence
SMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETS
AKESTAIDEAFIKLASDIKKSTPQK*klf*kksnkqkikqns**qitkkkxkkkkkktkk
kktkkqkti*nnkit**kliisfvfify*


Translated Amino Acid sequence (All Frames)
Frame A:
hqwtllia*rdg*smlidsqvhqf*n**lvinvisiqreplilrlqrnlqmn*iyq*wkl
aqknqlqlmkhsln*lltlkrvlhknknffkknqtnkksnktvnnk*qkkxxkkkkkkqk
kkkqknkkqykitk*lnkn**yhlflffik


Frame B:
inglf**hkemvnrc**irksisfkinsw**m*sqfkesr*f*dckeicr*ikytnngn*
rkrincn**sih*isf*h*keystkiktflkkikqtknqtkqlitnnkkkxkkkkkknkk
kknkktknnik*qnnlikinniicfyflln


Frame C:
SMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETS
AKESTAIDEAFIKLASDIKKSTPQK*klf*kksnkqkikqns**qitkkkxkkkkkktkk
kktkkqkti*nnkit**kliisfvfify*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM526 (SSM526Q) /CSM/SS/SSM5-B/SSM526Q.Seq.d/ 466 e-130
SSK733 (SSK733Q) /CSM/SS/SSK7-B/SSK733Q.Seq.d/ 466 e-130
SSI803 (SSI803Q) /CSM/SS/SSI8-A/SSI803Q.Seq.d/ 466 e-130
SSF625 (SSF625Q) /CSM/SS/SSF6-B/SSF625Q.Seq.d/ 466 e-130
SSE658 (SSE658Q) /CSM/SS/SSE6-C/SSE658Q.Seq.d/ 466 e-130
SSC890 (SSC890Q) /CSM/SS/SSC8-D/SSC890Q.Seq.d/ 466 e-130
SSC149 (SSC149Q) /CSM/SS/SSC1-C/SSC149Q.Seq.d/ 466 e-130
SSI731 (SSI731Q) /CSM/SS/SSI7-B/SSI731Q.Seq.d/ 355 4e-97
SSB250 (SSB250Q) /CSM/SS/SSB2-C/SSB250Q.Seq.d/ 224 9e-58
SSD235 (SSD235Q) /CSM/SS/SSD2-B/SSD235Q.Seq.d/ 113 2e-24

own update 2000. 8.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB015237|AB015237.1 Dictyostelium discoideum Rab1C mRNA, complete cds. 466 e-131 2
BZ668339|BZ668339.1 PUBJV33TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa071F18, DNA sequence. 42 0.20 2
AC131368|AC131368.3 Rattus norvegicus clone CH230-123J22, WORKING DRAFT SEQUENCE, 1 ordered piece. 48 0.88 2
AC102549|AC102549.3 Mus musculus clone RP23-138E12, WORKING DRAFT SEQUENCE, 2 ordered pieces. 44 2.2 5
AL136362|AL136362.10 Human DNA sequence from clone RP13-136L2 on chromosome X. 34 2.9 3
AC128013|AC128013.3 Rattus norvegicus clone CH230-481G12, WORKING DRAFT SEQUENCE, 1 ordered piece. 48 4.2 3
AC004071|AC004071.1 Homo sapiens, WORKING DRAFT SEQUENCE, 1 ordered pieces. 34 4.2 3
CA901669|CA901669.1 PCSC18945 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Maturase-like protein, mRNA sequence. 42 5.7 1
CA901667|CA901667.1 PCSC17036 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Maturase-like protein, mRNA sequence. 42 5.7 1
BE022157|BE022157.1 sm68d02.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-9052 5' similar to SW:IDE_RAT P35559 INSULIN-DEGRADING ENZYME ;, mRNA sequence. 42 5.7 1
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O76173) RecName: Full=Ras-related protein Rab-1C; &AB015237_1(... 163 2e-39
DQ372931_1(DQ372931|pid:none) Pinus pinaster Rab1 mRNA, complete... 102 4e-21
AC159407_36(AC159407|pid:none) Trypanosoma brucei chromosome 8 c... 101 7e-21
AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom... 101 9e-21
BT052509_1(BT052509|pid:none) Medicago truncatula clone MTYFD_FE... 100 1e-20
GN106103_1(GN106103|pid:none) Sequence 10884 from Patent WO20090... 100 2e-20
(P22125) RecName: Full=Ras-related protein ORAB-1; &M38393_1(M3... 100 2e-20
GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456... 100 2e-20
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342... 100 2e-20
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on... 100 2e-20
protein update 2009. 7. 6
PSORT

psg: 0.58 gvh: 0.32 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSC890 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC890E
Full length Seq.
>SSC890E.Seq
CATCAATGGACTCTTTTAATAGCATAAAGAGATGGTTAATCGATGTTGATAGATTCGCAA
GTCCATCAGTTTTAAAATTAATAGTTGGTAATAAATGTGATCTCAATTCAAAGAGAGCCG
TTGATTTTAAGATTGCAAAGAAATTTGCAGATGAATTAAATATACCAATAATGGAAACTA
GCGCAAAAGAATCAACTGCAATTGATGAAGCATTCATTAAATTAGCTTCTGACATTAAAA
AGAGTACTCCACAAAAATAAAAACTTTTTTAAAAAAAATCAAACAAACAAAAAATCAAAC
AAAACAGTTAATAACAAATAACAAAAAAAAAANNAAAAAAAAAAAAAAAAAAAACAAAAA
AAAAAAAAACAAAAAAACAAAAAACAATATAAAATAACAAAATAACTTAATAAAAATTAA
TAATATCATTTGTTTTTATTTTTTATTAAAT
Length of full length seq. 451