SSC879 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSC879
Library	SS (Link to library)
Clone ID	SSC879 (Link to dictyBase)
Atlas ID	-
NBRP ID	G00650
dictyBase ID	DDB0231447
Link to Contig	Contig-U04510-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSC8-D/SSC879Q.Seq.d/
Representative seq. ID	SSC879E (Link to Original site)
Representative DNA sequence	>SSC879 (SSC879Q) /CSM/SS/SSC8-D/SSC879Q.Seq.d/ AAAAAAAAAAAAAAAAAAACCTTCATTTTTATCAAAAACTCTCAAAGTATTAATTTTGAA AATAAAAAATGATGCAAGCACCAATGATAGCTGCAACTAATCCAAATTGTCCAATTGCGA TAGTTGCAAATCACAAATTATCTCTTCCACCAGGAGCATGTCCATTTGTAGTAAATCCAA ATGGAAATGGTAAAATCAGAATTCGTTTAATATCAGCTTCAAACTTAATTTCTGCAGATG CAAATGGGTACTCTGATCCTTATATTAAAGTCAAATCAACAAGGATTCTATGAAAGTTAC AAAAGTAATTGAAAAAAATTTAAATCCAGTTTGGAATGAAGAGGTTGTACTCGATATTTC AAGTGTTGGTAGAGAACTTTTTATTTTTGATGTTTATGATAGTGATAAAGTTGGAAATGA TGATTTGTTAGGTTTTGTTGGTGTTGATCTTTCACTTTTACCATTAGGTATTGAAGTTTT AACATGTGAAAATTTATCATTTGCTAAACATGGTGTTCTTCAAATTGGTATTACAGCATT AGATTTTGGTCTTACAAATATTCCACCAAATTATTTACATGCATATACAGAATGGAGAAA TACTTTGCCAGGTCATCAAAGAAAAGAATTGAATTTAAAAAATTAAAGAAACATAAAGAT TCATGTGGACCATATGCAAATAAAGTTGTTCATGAAGATTACAAAGTTACAAATGGTTAT CTTAAAAGAAAGAAGAGTAAACGTGAAAAAACNNCAAAAGGTTTTGTAAAAGGTTTGAAA ATTGCTGGAAAAGTATCACTCAAAGTATTAGATTCAGCAACTGAGGATGANTAAATATCA AATTCTTTTCTTTTTTTTTTCCATAAAAACTATATAAAAAAAAATAAAAAAAAAAGTGTA TCAGTAAATTATATTATAATATTGAATTAAAAAAAAAA
sequence update	1999. 4. 5
Translated Amino Acid sequence	kkkkkkpsflsktlkvlilkikndastndscnsklsncdscksqiisstrsmsicsksk wkwnqnsfnisfklnfcrckwvlslySQINKDSMKVTKVIEKNLNPVWNEEVVLDIS SVGRELFIFDVYDSDKVGNDDLLGFVGVDLSLLPLGIEVLTCENLSFAKHGVLQIGITAL DFGLTNIPPNYLHAYTEWRNTLPGHQRKELNLKNrnikihvdhmqiklfmkitklqmvi lkerrvnvkkxqkvlkvkllekyhskyiqqlrmxkyqilffffsiktikkikkkvy qiilyikkk
Translated Amino Acid sequence (All Frames)	Frame A: kkkkkktfifiknsqsinfenkkckhqlqliqivqlrlqitnylfhqehvhl*iq memvksefvyqlqtflqmqmgtlililksnqqgfyesyksnkkfksslergctryf kcwrtfyfcl*swkfvrfcwcsftftirysfnmkfiictwcssnwyysi rfwsykystklftciyrmekyfarsskkriefkklkkhkdscgpyankvvhedykvtngy lkrkkskrektxkgfvkglkiagkvslkvldsatedxisnsflfffhknyikknkkksv svnyiiilnkk Frame B: kkkkkkpsflsktlkvlilkikndastndscnsklsncdscksqiisstrsmsicsksk wkwnqnsfnisfklnfcrckwvlslySQINKDSMKVTKVIEKNLNPVWNEEVVLDIS SVGRELFIFDVYDSDKVGNDDLLGFVGVDLSLLPLGIEVLTCENLSFAKHGVLQIGITAL DFGLTNIPPNYLHAYTEWRNTLPGHQRKELNLKNrnikihvdhmqiklfmkitklqmvi lkerrvnvkkxqkvlkvkllekyhskyiqqlrmxkyqilffffsiktikkikkkvy qiilyikkk Frame C: kkkkknlhfyqklskyfkkmmqapmiaatnpncpiaivanhklslppgacpfvvnpn gngkirirlisasnlisadangysdpyikvkstrilklqklkkiiqfgmkrlysifq vlvenflflmfmiviklemmicvllvlifhfyhvlkfhvkiyhllnmvffklvlqh ilvlqifhqiiymhiqngeilcqvikeknikiketrfmwtickscsrlqsykwls kkeetknxkrfckrfencwksitqsirfsngxnikffsfffpklykkkkkkci sklyynielkkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSC879 (SSC879Q) /CSM/SS/SSC8-D/SSC879Q.Seq.d/ 1588 0.0 SSI145 (SSI145Q) /CSM/SS/SSI1-B/SSI145Q.Seq.d/ 793 0.0 VSB530 (VSB530Q) /CSM/VS/VSB5-B/VSB530Q.Seq.d/ 660 0.0 SSB184 (SSB184Q) /CSM/SS/SSB1-D/SSB184Q.Seq.d/ 418 e-116 VSD693 (VSD693Q) /CSM/VS/VSD6-D/VSD693Q.Seq.d/ 50 6e-05 AFL733 (AFL733Q) /CSM/AF/AFL7-B/AFL733Q.Seq.d/ 50 6e-05 SLK548 (SLK548Q) /CSM/SL/SLK5-B/SLK548Q.Seq.d/ 46 0.001 SLH804 (SLH804Q) /CSM/SL/SLH8-A/SLH804Q.Seq.d/ 46 0.001 SSG406 (SSG406Q) /CSM/SS/SSG4-A/SSG406Q.Seq.d/ 44 0.004 SSE158 (SSE158Q) /CSM/SS/SSE1-C/SSE158Q.Seq.d/ 44 0.004
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC115599\|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 452 0.0 8 AC115680\|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 46 1e-09 7 AF020408\|AF020408.1 Dictyostelium discoideum R2005 mRNA, complete cds. 42 0.002 3 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 34 0.005 12 I89438\|I89438.1 Sequence 25 from patent US 5721352. 36 0.030 3 I16685\|I16685.1 Sequence 25 from patent US 5476781. 36 0.030 3 AX392764\|AX392764.1 Sequence 54 from Patent WO0212526. 36 0.030 3 AR214743\|AR214743.1 Sequence 25 from patent US 6410221. 36 0.030 3 AB054584\|AB054584.1 Entamoeba histolytica EhRab9A mRNA for small GTPase Rab9A, complete cds. 50 0.050 1 AZ537756\|AZ537756.1 ENTDD96TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 50 0.050 1
dna update	2003. 7.31
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC115599_39(AC115599\|pid:none) Dictyostelium discoideum chromoso... 237 5e-99 AC116920_16(AC116920\|pid:none) Dictyostelium discoideum chromoso... 163 1e-56 AC116986_30(AC116986\|pid:none) Dictyostelium discoideum chromoso... 116 6e-32 (Q03640) RecName: Full=Tricalbin-3; &S48824(S48824) &Z46373_10(... 48 7e-09 E86165(E86165)F15K9.2 protein - Arabidopsis thaliana 48 7e-09 AC005278_2(AC005278\|pid:none) Arabidopsis thaliana chromosome 1 ... 48 7e-09 CU928168_700(CU928168\|pid:none) Kluyveromyces thermotolerans str... 54 1e-08 CR382136_399(CR382136\|pid:none) Debaryomyces hansenii strain CBS... 48 2e-08 FN357896_7(FN357896\|pid:none) Schistosoma mansoni genome sequenc... 54 2e-08 BC074133_1(BC074133\|pid:none) Xenopus laevis Nedd4 protein, mRNA... 51 9e-08
protein update	2009. 7. 6
PSORT	psg: 0.54 gvh: 0.27 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 32.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for SSC879 is cyt
5' end seq. ID	SSC879F
5' end seq.	>SSC879F.Seq AAAAAAAAAAAAAAAAAAACCTTCATTTTTATCAAAAACTCTCAAAGTATTAATTTTGAA AATAAAAAATGATGCAAGCACCAATGATAGCTGCAACTAATCCAAATTGTCCAATTGCGA TAGTTGCAAATCACAAATTATCTCTTCCACCAGGAGCATGTCCATTTGTAGTAAATCCAA ATGGAAATGGTAAAATCAGAATTCGTTTAATATCAGCTTCAAACTTAATTTCTGCAGATG CAAATGGGTACTCTGATCCTTATATTAAAGTCAAATCAACAAGTATAGATTCTATGAAAG TTACAAAAGTAATTGAAAAAAATTTAAATCCAGTTTGGAATGAAGAGGTTGTACTCGATA TTTCAAGTGTTGGTAGAGAACTTTTTATTTTTGATGTTTATGATAGTGATAAAGTTGGAA ATGATGATTTGTTAGGTTTTGTTGGTGTTGATCTTTCACTTTTACCATTAGGTATTGAAG TTTTAACATGTGAAAATTTATCATTTGCTAAACATGGTGTTCTTCAAATTGGTATTACAG CATTAGATTTTGGTCTTACAAATATTCCACCAAATTATTTACATGCATATACAGAATGGA GAAATACTTTGCCAGGTCATCAAAGAAAAGAATT----------
Length of 5' end seq.	634
3' end seq. ID	SSC879Z
3' end seq.	>SSC879Z.Seq ----------GATTCTATGAAAGTTACAAAAGTAATTGAAAAAAATTTAAATCCAGTTTG GAATGAAGAGGTTGTACTCGATATTTCAAGTGTTGGTAGAGAACTTTTTATTTTTGATGT TTATGATAGTGATAAAGTTGGAAATGATGATTTGTTAGGTTTTGTTGGTGTTGATCTTTC ACTTTTACCATTAGGTATTGAAGTTTTAACATGTGAAAATTTATCATTTGCTAAACATGG TGTTCTTCAAATTGGTATTACAGCATTAGATTTTGGTCTTACAAATATTCCACCAAATTA TTTACATGCATATACAGAATGGAGAAATACTTTGCCAGGTCATCAAAGAAAAGAATTTAA AAAATTAAAGAAACATAAAGATTCATGTGGACCATATGCAAATAAAGTTGTTCATGAAGA TTACAAAGTTACAAATGGTTATCTTAAAAGAAAGAAGAGTAAACGTGAAAAAACNNCAAA AGGTTTTGTAAAAGGTTTGAAAATTGCTGGAAAAGTATCACTCAAAGTATTAGATTCAGC AACTGAGGATGANTAAATATCAAATTCTTTTCTTTTTTTTTTCCATAAAAACTATATAAA AAAAAATAAAAAAAAAAGTGTATCAGTAAATTATATTATAATATTGAATTAAAAAAAAAA AAAAAAAAAA
Length of 3' end seq.	660
Connected seq. ID	SSC879P
Connected seq.	>SSC879P.Seq AAAAAAAAAAAAAAAAAAACCTTCATTTTTATCAAAAACTCTCAAAGTATTAATTTTGAA AATAAAAAATGATGCAAGCACCAATGATAGCTGCAACTAATCCAAATTGTCCAATTGCGA TAGTTGCAAATCACAAATTATCTCTTCCACCAGGAGCATGTCCATTTGTAGTAAATCCAA ATGGAAATGGTAAAATCAGAATTCGTTTAATATCAGCTTCAAACTTAATTTCTGCAGATG CAAATGGGTACTCTGATCCTTATATTAAAGTCAAATCAACAAGTATAGATTCTATGAAAG TTACAAAAGTAATTGAAAAAAATTTAAATCCAGTTTGGAATGAAGAGGTTGTACTCGATA TTTCAAGTGTTGGTAGAGAACTTTTTATTTTTGATGTTTATGATAGTGATAAAGTTGGAA ATGATGATTTGTTAGGTTTTGTTGGTGTTGATCTTTCACTTTTACCATTAGGTATTGAAG TTTTAACATGTGAAAATTTATCATTTGCTAAACATGGTGTTCTTCAAATTGGTATTACAG CATTAGATTTTGGTCTTACAAATATTCCACCAAATTATTTACATGCATATACAGAATGGA GAAATACTTTGCCAGGTCATCAAAGAAAAGAATT----------GATTCTATGAAAGTTA CAAAAGTAATTGAAAAAAATTTAAATCCAGTTTGGAATGAAGAGGTTGTACTCGATATTT CAAGTGTTGGTAGAGAACTTTTTATTTTTGATGTTTATGATAGTGATAAAGTTGGAAATG ATGATTTGTTAGGTTTTGTTGGTGTTGATCTTTCACTTTTACCATTAGGTATTGAAGTTT TAACATGTGAAAATTTATCATTTGCTAAACATGGTGTTCTTCAAATTGGTATTACAGCAT TAGATTTTGGTCTTACAAATATTCCACCAAATTATTTACATGCATATACAGAATGGAGAA ATACTTTGCCAGGTCATCAAAGAAAAGAATTTAAAAAATTAAAGAAACATAAAGATTCAT GTGGACCATATGCAAATAAAGTTGTTCATGAAGATTACAAAGTTACAAATGGTTATCTTA AAAGAAAGAAGAGTAAACGTGAAAAAACNNCAAAAGGTTTTGTAAAAGGTTTGAAAATTG CTGGAAAAGTATCACTCAAAGTATTAGATTCAGCAACTGAGGATGANTAAATATCAAATT CTTTTCTTTTTTTTTTCCATAAAAACTATATAAAAAAAAATAAAAAAAAAAGTGTATCAG TAAATTATATTATAATATTGAATTAAAAAAAAAAAAAAAAAAAA
Length of connected seq.	1294
Full length Seq ID	SSC879E
Full length Seq.	>SSC879E.Seq AAAAAAAAAAAAAAAAAAACCTTCATTTTTATCAAAAACTCTCAAAGTATTAATTTTGAA AATAAAAAATGATGCAAGCACCAATGATAGCTGCAACTAATCCAAATTGTCCAATTGCGA TAGTTGCAAATCACAAATTATCTCTTCCACCAGGAGCATGTCCATTTGTAGTAAATCCAA ATGGAAATGGTAAAATCAGAATTCGTTTAATATCAGCTTCAAACTTAATTTCTGCAGATG CAAATGGGTACTCTGATCCTTATATTAAAGTCAAATCAACAAGGATTCTATGAAAGTTAC AAAAGTAATTGAAAAAAATTTAAATCCAGTTTGGAATGAAGAGGTTGTACTCGATATTTC AAGTGTTGGTAGAGAACTTTTTATTTTTGATGTTTATGATAGTGATAAAGTTGGAAATGA TGATTTGTTAGGTTTTGTTGGTGTTGATCTTTCACTTTTACCATTAGGTATTGAAGTTTT AACATGTGAAAATTTATCATTTGCTAAACATGGTGTTCTTCAAATTGGTATTACAGCATT AGATTTTGGTCTTACAAATATTCCACCAAATTATTTACATGCATATACAGAATGGAGAAA TACTTTGCCAGGTCATCAAAGAAAAGAATTGAATTTAAAAAATTAAAGAAACATAAAGAT TCATGTGGACCATATGCAAATAAAGTTGTTCATGAAGATTACAAAGTTACAAATGGTTAT CTTAAAAGAAAGAAGAGTAAACGTGAAAAAACNNCAAAAGGTTTTGTAAAAGGTTTGAAA ATTGCTGGAAAAGTATCACTCAAAGTATTAGATTCAGCAACTGAGGATGANTAAATATCA AATTCTTTTCTTTTTTTTTTCCATAAAAACTATATAAAAAAAAATAAAAAAAAAAGTGTA TCAGTAAATTATATTATAATATTGAATTAAAAAAAAAA
Length of full length seq.	938

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas