>AFK872 (AFK872Q) /CSM/AF/AFK8-C/AFK872Q.Seq.d/
XXXXXXXXXXTTCAAGTAAAGAAACGTATTATGAGAGCCACCGAAAGTTGATACTTTAAA
TTCAATACCAATGATGTTCTCAACTTCAAATAGATTCGTTTATTATGTACCAGCAAAATC
AAATGACGATCCAAGATGGGATGCAGTTATCGATAAACTTCAAATGGTTGGTAGAGGCAA
TGGTGGCGCTGTTAGAGGTATCTATAAAGGTGTTATTGAGACCACTTTCTTTGGCAAAAG
AGTTTATTTGGTTGGTACCTATTCACCATTCTATAGTCAACAACAAAGAAATAAAAGTCA
ACGTATACTTTTCAATGATTTTCCAAAGGAAGAATTTGATCCAACCATCACAAATCCTTT
AACAAGTACTATGCTATTTAGAACTGATAAAGATCTCTCATTGGATATTACTTTGGCTGA
AAAAGTTTTCTCTTGTAAAGACTTTTGTGAAAAACATAAAGTATCATGTTTAGAATCTGA
TATGATGTTATTAACTGATAGTACTATAGTTTTACTACAATTGGAACAACATTGTAGTCA
AGTAAACTATATACCAAGTAATAATACCGATACATTTTATCC

---k*rnvl*EPPKVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNG
GAVRGIYKGVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLT
STMLFRTDKDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQV
NYIPSNNTDTFY

Frame A:
---ssketyyeshrklil*iqyq*csqlqidsfimyqqnqmtiqdgmqlsinfkwlveam
vallevsikvllrplslakefiwlvpihhsivnnkeikvnvyfsmifqrknliqpsqil*
qvlcylelikishwillwlkkfslvktfvknikyhv*nli*cy*livl*fyynwnnivvk
*tiyqviipihfi


Frame B:
---qvkkrimrates*yfkfntndvlnfk*irllctskik*rskmgcsyr*tsngw*rqw
wrc*ryl*rcy*dhflwqkslfgwylftil*sttkk*kstytfq*fskgri*snhhksfn
kyyai*n**rsligyyfg*ksfll*rll*kt*simfri*ydvin**yysfttigttl*ss
klytk**yryils


Frame C:
---k*rnvl*EPPKVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNG
GAVRGIYKGVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLT
STMLFRTDKDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQV
NYIPSNNTDTFY

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFK872 (AFK872Q) /CSM/AF/AFK8-C/AFK872Q.Seq.d/                       1134   0.0
CHD312 (CHD312Q) /CSM/CH/CHD3-A/CHD312Q.Seq.d/                       1118   0.0
AFO831 (AFO831Q) /CSM/AF/AFO8-B/AFO831Q.Seq.d/                       1104   0.0
AFF364 (AFF364Q) /CSM/AF/AFF3-C/AFF364Q.Seq.d/                       1102   0.0
AHK215 (AHK215Q) /CSM/AH/AHK2-A/AHK215Q.Seq.d/                       1090   0.0
CFG834 (CFG834Q) /CSM/CF/CFG8-B/CFG834Q.Seq.d/                       1084   0.0
AFM267 (AFM267Q) /CSM/AF/AFM2-C/AFM267Q.Seq.d/                       1074   0.0
SFI706 (SFI706Q) /CSM/SF/SFI7-A/SFI706Q.Seq.d/                       1070   0.0
SFE435 (SFE435Q) /CSM/SF/SFE4-B/SFE435Q.Seq.d/                       1070   0.0
AFI627 (AFI627Q) /CSM/AF/AFI6-B/AFI627Q.Seq.d/                       1063   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR376789|CR376789.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.042  8
AC011252|AC011252.5 Drosophila melanogaster clone BACR23H21, complete sequence.    42   0.051  6
AI484136|AI484136.1 EST248943 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER1C5, mRNA sequence.    38   0.12   2
BG128254|BG128254.1 EST473900 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF19D15 5' sequence, mRNA sequence.    38   0.12   2
AI490786|AI490786.1 EST241494 tomato shoot, Cornell Lycopersicon esculentum cDNA clone cLEB3H9 similar to cinnamic acid 4-hydroxylase, mRNA sequence.    38   0.12   2
BG133859|BG133859.1 EST466751 tomato crown gall Lycopersicon esculentum cDNA clone cTOE14I10 5' sequence, mRNA sequence.    38   0.12   2
AI773934|AI773934.1 EST255034 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER8N1, mRNA sequence.    38   0.12   2
AE003601|AE003601.3 Drosophila melanogaster chromosome 3R, section 7 of 118 of the complete sequence.    42   0.37   7
AC092695|AC092695.8 Homo sapiens 3q BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42   0.42   5
BX323843|BX323843.9 Zebrafish DNA sequence from clone CH211-10A23 in linkage group 19.    46   0.62   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17877_1(Y17877|pid:none) Sycon raphanus mRNA for insulin recept...    36   0.82
BT011349_1(BT011349|pid:none) Drosophila melanogaster RH02355 fu...    35   1.1
AY069808_1(AY069808|pid:none) Drosophila melanogaster SD04942 fu...    35   1.1
AE014297_4620(AE014297|pid:none) Drosophila melanogaster chromos...    35   1.1
CP001175_2092(CP001175|pid:none) Listeria monocytogenes HCC23, c...    35   1.8
AC009322_3(AC009322|pid:none) Arabidopsis thaliana chromosome I ...    34   2.4
AE009439_1402(AE009439|pid:none) Methanopyrus kandleri AV19, com...    33   4.1
AX814538_1(AX814538|pid:none) Sequence 19 from Patent WO03064471.      33   4.1
DQ812518_2(DQ812518|pid:none) Spironucleus barkhanus isolate Sp1...    33   4.1
AJ010592_91(AJ010592|pid:none) Guillardia theta DNA for complete...    33   4.1

 psg: 0.75  gvh: 0.39  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for AFK872 is cyt

>AFK872Z.Seq
----------TTCAAGTAAAGAAACGTATTATGAGAGCCACCGAAAGTTGATACTTTAAA
TTCAATACCAATGATGTTCTCAACTTCAAATAGATTCGTTTATTATGTACCAGCAAAATC
AAATGACGATCCAAGATGGGATGCAGTTATCGATAAACTTCAAATGGTTGGTAGAGGCAA
TGGTGGCGCTGTTAGAGGTATCTATAAAGGTGTTATTGAGACCACTTTCTTTGGCAAAAG
AGTTTATTTGGTTGGTACCTATTCACCATTCTATAGTCAACAACAAAGAAATAAAAGTCA
ACGTATACTTTTCAATGATTTTCCAAAGGAAGAATTTGATCCAACCATCACAAATCCTTT
AACAAGTACTATGCTATTTAGAACTGATAAAGATCTCTCATTGGATATTACTTTGGCTGA
AAAAGTTTTCTCTTGTAAAGACTTTTGTGAAAAACATAAAGTATCATGTTTAGAATCTGA
TATGATGTTATTAACTGATAGTACTATAGTTTTACTACAATTGGAACAACATTGTAGTCA
AGTAAACTATATACCAAGTAATAATACCGATACATTTTATCC