>SSC868 (SSC868Q) /CSM/SS/SSC8-C/SSC868Q.Seq.d/
XXXXXXXXXXTAACTAATCCACGTTGGAGAAGTCCAGAGCTAACAAAAGGATTGGTGTAT
AATGAAAAAGTTGATGTATACAGTTTTGGTTTGGTGGTTTATGAAATTTATACTGGTAAA
ATACCATTCGAAGGTTTGGATGGTACTGCATCTNNGCTAAAGCTGCATTTGAAAATTTTA
GACCTGCAATCCCACCCGATTGTCCAGTGTCCCTTAGAAAATTAATTACAAAATGTTGGG
CNNCCGATCCTTCACAACGTCCATCATTTACCGAAATTTTAACAGAATTAGAAACAATGA
AATCAAAATTCATTAAACAACTTAGTTTCTTGAATGATTTAATTCAAAATCCAGATGATG
ATTATAATAACAATTTAAATTATGATGAAGAGGTTGATAGTTAGTTTTGGTAAACAAAAA
TTAATTTTTTTTTAAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---n*stleksrankrigv**ks*ciqfwfggl*nlyw*NTIRRFGWYCIXAKAAFENFR
PAIPPDCPVSLRKLITKCWAXDPSQRPSFTEILTELETMKSKFIKQLSFLNDLIQNPDDD
YNNNLNYDEEVDS*fw*tkinfflrk*kkkkkkkkkkkk*kkkkkkkkk

Frame A:
---n*stleksrankrigv**ks*ciqfwfggl*nlyw*NTIRRFGWYCIXAKAAFENFR
PAIPPDCPVSLRKLITKCWAXDPSQRPSFTEILTELETMKSKFIKQLSFLNDLIQNPDDD
YNNNLNYDEEVDS*fw*tkinfflrk*kkkkkkkkkkkk*kkkkkkkkk


Frame B:
---tnprwrspeltkglvynekvdvysfglvvyeiytgkipfegldgtasxlklhlkild
lqshpivqcplen*lqnvgxpilhnvhhlpkf*qn*kq*nqnslnnlvs*mi*fkiqmmi
iiti*immkrlivsfgkqkliff*enkkkkkkkkkkkknkkkkkkkkkk


Frame C:
---lihvgevqs*qkdwcimkklmytvlvwwfmkfilvkyhskvwmvlhlx*sci*kf*t
cnptrlssvp*kinykmlgxrsfttsiiyrnfnrirnneikih*tt*fle*fnsksr**l
**qfkl**rg**lvlvnkn*fffkkikkkkkkkkkkkkikkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC868 (SSC868Q) /CSM/SS/SSC8-C/SSC868Q.Seq.d/                        797   0.0
VSJ862 (VSJ862Q) /CSM/VS/VSJ8-C/VSJ862Q.Seq.d/                        733   0.0
AHN683 (AHN683Q) /CSM/AH/AHN6-D/AHN683Q.Seq.d/                        702   0.0
SFJ737 (SFJ737Q) /CSM/SF/SFJ7-B/SFJ737Q.Seq.d/                        696   0.0
CFK442 (CFK442Q) /CSM/CF/CFK4-B/CFK442Q.Seq.d/                        664   0.0
VHI128 (VHI128Q) /CSM/VH/VHI1-B/VHI128Q.Seq.d/                        630   e-180
SHB385 (SHB385Q) /CSM/SH/SHB3-D/SHB385Q.Seq.d/                        589   e-167
SSK355 (SSK355Q) /CSM/SS/SSK3-C/SSK355Q.Seq.d/                        553   e-157
AHN520 (AHN520Q) /CSM/AH/AHN5-A/AHN520Q.Seq.d/                        543   e-154
AHC614 (AHC614Q) /CSM/AH/AHC6-A/AHC614Q.Seq.d/                        490   e-137

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U64830|U64830.1 Dictyostelium discoideum AX2 protein tyrosine kinase gene, complete cds.   505  0.0  2
U01064|U01064.1 Dictyostelium discoideum AX2 protein tyrosine kinase mRNA, partial cds.   474  0.0  3
AF356600|AF356600.1 Dictyostelium discoideum filament-interacting protein (fip) mRNA, complete cds.    36  0.075  3
AJ310823|AJ310823.1 Medicago truncatula genomic DNA, Sy4 locus.    48  0.11  1
BI815698|BI815698.1 PfESToaa31f08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    48  0.11  1
BQ596214|BQ596214.1 PfESToab30g09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    48  0.11  1
BI814440|BI814440.1 PfESToaa22f12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    48  0.11  1
BQ451045|BQ451045.1 PfESToab03b07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    48  0.11  1
AC107261|AC107261.4 Rattus norvegicus clone CH230-45G13, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  0.29  2
AL450406|AL450406.17 Mouse DNA sequence from clone RP23-262J21 on chromosome 13.    36  0.76  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T18287(T18287) protein-tyrosine kinase (EC 2.7.1.112) - slime mo...   129   2e-53
(Q54I36) RecName: Full=Dual specificity protein kinase dpyk3;   ...   129   2e-53
U01064_1(U01064|pid:none) Dictyostelium discoideum AX2 protein t...   129   2e-53
B35670(B35670) protein-tyrosine kinase (EC 2.7.1.112) 2 - slime ...    66   2e-18
BT064057_1(BT064057|pid:none) Zea mays full-length cDNA clone ZM...    54   3e-16
AP002845_6(AP002845|pid:none) Oryza sativa Japonica Group genomi...    59   7e-16
FB918186_1(FB918186|pid:none) Sequence 137459 from Patent WO2008...    54   2e-15
(Q55GE6) RecName: Full=Probable serine/threonine-protein kinase ...    61   2e-15
AY232269_1(AY232269|pid:none) Dictyostelium discoideum putative ...    61   2e-15
FB918126_1(FB918126|pid:none) Sequence 137399 from Patent WO2008...    54   4e-15

 psg: 0.89  gvh: 0.54  alm: 0.55  top: 0.33  tms: 0.00  mit: 0.43  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SSC868 is exc

>SSC868Z.Seq
----------TAACTAATCCACGTTGGAGAAGTCCAGAGCTAACAAAAGGATTGGTGTAT
AATGAAAAAGTTGATGTATACAGTTTTGGTTTGGTGGTTTATGAAATTTATACTGGTAAA
ATACCATTCGAAGGTTTGGATGGTACTGCATCTNNGCTAAAGCTGCATTTGAAAATTTTA
GACCTGCAATCCCACCCGATTGTCCAGTGTCCCTTAGAAAATTAATTACAAAATGTTGGG
CNNCCGATCCTTCACAACGTCCATCATTTACCGAAATTTTAACAGAATTAGAAACAATGA
AATCAAAATTCATTAAACAACTTAGTTTCTTGAATGATTTAATTCAAAATCCAGATGATG
ATTATAATAACAATTTAAATTATGATGAAGAGGTTGATAGTTAGTTTTGGTAAACAAAAA
TTAATTTTTTTTTAAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA