SSC819
Library SS
(Link to library)
Clone ID SSC819
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12197-1
Original site URL
Representative seq. ID SSC819F
(Link to Original site)
Representative DNA sequence
>SSC819 (SSC819Q) /CSM/SS/SSC8-A/SSC819Q.Seq.d/
CAAAATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATAAAATAAAAC
TCAAATAAATAACACAATGGAAGAAATTGCATTTTTAATGGATGCTATCGAAACACCAAA
TTTACTCGAACAAAATTCTCCACTTTATTTATTTATGAGTAAAGATGGTAAAGATAAAGA
TACCAACAGTATTAGCAGTAGTGGTAGTATTTCAAATATCCTCCTCCAACAACAGCAACA
ACAACTACAACTACAACAACAACTACAACAACAACAAGCCAAAGAAGTAAAAGATCCAAT
AAATAGCATTGATGCACAATCCAATGGAGATAATGATAATGXXXXXXXXXX
sequence update 1998. 9. 9
Translated Amino Acid sequence
ki*kkkkkkkkkkktk*NKTQINNTMEEIAFLMDAIETPNLLEQNSPLYLFMSKDGKDKD
TNSISSSGSISNILLQQQQQQLQLQQQLQQQQAKEVKDPINSIDAQSNGDNDN---


Translated Amino Acid sequence (All Frames)
Frame A:
qnlkkkkkkkkkkknkik*nsnk*hngrncifngcyrntkftrtkfstlfiye*rw*r*r
yqqy*q*w*yfkypppttatttttttttttttsqrskrsnk*h*ctiqwr***---


Frame B:
ki*kkkkkkkkkkktk*NKTQINNTMEEIAFLMDAIETPNLLEQNSPLYLFMSKDGKDKD
TNSISSSGSISNILLQQQQQQLQLQQQLQQQQAKEVKDPINSIDAQSNGDNDN---


Frame C:
kfekkkkkkkkkkkqnkiklk*itqwkklhf*wmlskhqiysnkilhfiyl*vkmvkiki
ptvlavvvvfqisssnnsnnnynynnnynnnkpkk*kiq*ialmhnpmeimi---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC819 (SSC819Q) /CSM/SS/SSC8-A/SSC819Q.Seq.d/ 331 4e-90
VHP762 (VHP762Q) /CSM/VH/VHP7-C/VHP762Q.Seq.d/ 323 1e-87
AFL775 (AFL775Q) /CSM/AF/AFL7-D/AFL775Q.Seq.d/ 323 1e-87
SSD242 (SSD242Q) /CSM/SS/SSD2-B/SSD242Q.Seq.d/ 40 0.022
SSC621 (SSC621Q) /CSM/SS/SSC6-A/SSC621Q.Seq.d/ 40 0.022
SFL166 (SFL166Q) /CSM/SF/SFL1-C/SFL166Q.Seq.d/ 40 0.022
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/ 40 0.022
SFJ824 (SFJ824Q) /CSM/SF/SFJ8-A/SFJ824Q.Seq.d/ 40 0.022
SFJ554 (SFJ554Q) /CSM/SF/SFJ5-C/SFJ554Q.Seq.d/ 40 0.022
SFI332 (SFI332Q) /CSM/SF/SFI3-B/SFI332Q.Seq.d/ 40 0.022

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ872371|AZ872371.1 2M0185K08R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0185K08 R, DNA sequence. 48 0.071 1
AZ872466|AZ872466.1 2M0185M08R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0185M08 R, DNA sequence. 48 0.071 1
AC110076|AC110076.4 Homo sapiens BAC clone RP11-309M5 from 4, complete sequence. 46 0.28 1
AC068834|AC068834.1 Homo sapiens chromosome 4 clone RP11-250L22 map 4, LOW-PASS SEQUENCE SAMPLING. 46 0.28 1
AC094560|AC094560.9 Rattus norvegicus clone CH230-4K1, WORKING DRAFT SEQUENCE, 1 ordered piece. 38 0.54 2
BX119918|BX119918.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-202H22. 40 0.79 5
AC087511|AC087511.4 Mus musculus clone RP23-169K1 strain C57BL6/J, WORKING DRAFT SEQUENCE, 17 unordered pieces. 44 1.1 1
AC128697|AC128697.2 Mus musculus chromosome UNK clone RP24-388P9, WORKING DRAFT SEQUENCE, 9 unordered pieces. 44 1.1 1
BH232018|BH232018.1 1006165F04.1EL_x1 1006 - RescueMu Grid G Zea mays genomic, DNA sequence. 32 1.8 2
AC102247|AC102247.2 Mus musculus clone RP24-157P13, WORKING DRAFT SEQUENCE, 7 unordered pieces. 48 1.8 2
dna update 2003. 7.30
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 325,620,146
protein update 2009. 6.10
PSORT

psg: 0.75 gvh: 0.44 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SSC819 is cyt

5' end seq. ID SSC819F
5' end seq.
>SSC819F.Seq
CAAAATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATAAAATAAAAC
TCAAATAAATAACACAATGGAAGAAATTGCATTTTTAATGGATGCTATCGAAACACCAAA
TTTACTCGAACAAAATTCTCCACTTTATTTATTTATGAGTAAAGATGGTAAAGATAAAGA
TACCAACAGTATTAGCAGTAGTGGTAGTATTTCAAATATCCTCCTCCAACAACAGCAACA
ACAACTACAACTACAACAACAACTACAACAACAACAAGCCAAAGAAGTAAAAGATCCAAT
AAATAGCATTGATGCACAATCCAATGGAGATAATGATAATG----------
Length of 5' end seq. 341
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -