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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC808
Library SS
(Link to library)
Clone ID SSC808
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14982-1
Original site URL
Representative seq. ID SSC808F
(Link to Original site)
Representative DNA sequence 
>SSC808 (SSC808Q) /CSM/SS/SSC8-A/SSC808Q.Seq.d/
AAAAAAAAAAGTTATAAAGAGCAACTCTAAACTTTTTATTAGATCCATAGTATTACTATA
TCACATTTTACTCGTATGAGCTCAATTCAAAATCTTAACTCAGCTGACCCATTTGCTGAA
GACTCTAATTTAGGTGGAGACTCAGGTATCAGTTACGTCCATATTCGTATTTTCCAAAGA
AGCGGCCGTAAAGCAGTAACAACCGTAGAAGGATTACCACCTAAGATTGACTTGAAAAAA
ATTTTGAAACATCTTAAGAAATCATTAAATTGTAATGGAAACATAGTAGAAGAAGAAAAC
CTTGGTATGGTTCTTCAACTCCAAGGAGATAAAAGAAAAGAAATCGCTCTCTTTTTAATT
GAAGAGAAGATCTCCCAAAAACCATCTATCAAGATACATGGTTTCTAAAAGAAAAAGAAT
GTGAACAAAAAAAAAAAAAGAAGAAAATCAAAAAAAAAAAAAGATAAAAACAAATTAAAC
ATTTATCTTTTTTCTCTTTTCTTTTTTTTTTTTTTTATAAXXXXXXXXXX
sequence update 1998. 9. 9
Translated Amino Acid sequence 
kkksykeql*tfy*IHSITISHFTRMSSIQNLNSADPFAEDSNLGGDSGISYVHIRIFQR
SGRKAVTTVEGLPPKIDLKKILKHLKKSLNCNGNIVEEENLGMVLQLQGDKRKEIALFLI
EEKISQKPSIKIHGF*kkknvnkkkkrrkskkkkdknklniylfslffffffi---
Translated Amino Acid sequence (All Frames) 
Frame A:
kkksykeql*tfy*IHSITISHFTRMSSIQNLNSADPFAEDSNLGGDSGISYVHIRIFQR
SGRKAVTTVEGLPPKIDLKKILKHLKKSLNCNGNIVEEENLGMVLQLQGDKRKEIALFLI
EEKISQKPSIKIHGF*kkknvnkkkkrrkskkkkdknklniylfslffffffi---


Frame B:
kkkviksnsklfirsivllyhillv*aqfkiltqlthllktli*vetqvsvtsifvfske
aavkq*qp*kdyhlrlt*kkf*nilrnh*ivmet**kkktlvwffnskeikekkslsf*l
krrspknhlsrymvskrkrm*tkkkkeenqkkkkiktn*tfifflfsffffl---


Frame C:
kkkl*ratlnflldp*yyyitfysyelnsks*ls*pic*rl*frwrlryqlrpysyfpkk
rp*ssnnrrritt*d*leknfets*eiikl*wkhsrrrkpwygsstprr*kkrnrslfn*
redlpktiyqdtwflkekeceqkkkkkkikkkkr*kqikhlsffsflffffy---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI762 (SSI762Q) /CSM/SS/SSI7-C/SSI762Q.Seq.d/                        783   0.0
SSC808 (SSC808Q) /CSM/SS/SSC8-A/SSC808Q.Seq.d/                        783   0.0
FC-AB19 (FC-AB19Q) /CSM/FC/FC-AB/FC-AB19Q.Seq.d/                      775   0.0
AFF279 (AFF279Q) /CSM/AF/AFF2-D/AFF279Q.Seq.d/                        771   0.0
SSD109 (SSD109Q) /CSM/SS/SSD1-A/SSD109Q.Seq.d/                        396   e-109
SSF463 (SSF463Q) /CSM/SS/SSF4-C/SSF463Q.Seq.d/                        375   e-103
VSJ603 (VSJ603Q) /CSM/VS/VSJ6-A/VSJ603Q.Seq.d/                        305   4e-82
SSJ492 (SSJ492Q) /CSM/SS/SSJ4-D/SSJ492Q.Seq.d/                        184   9e-46
VSE230 (VSE230Q) /CSM/VS/VSE2-B/VSE230Q.Seq.d/                         34   2.1
VHB375 (VHB375Q) /CSM/VH/VHB3-D/VHB375Q.Seq.d/                         34   2.1
own update 2004. 7.28
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   327  0.0  4
AC114673|AC114673.3 Mus musculus clone RP24-208K8, WORKING DRAFT SEQUENCE, 6 ordered pieces.    44  0.026  4
BE577315|BE577315.1 L48-2141T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-2141 5', mRNA sequence.    42  0.078  2
BM299909|BM299909.1 MCR047F05_24346 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR047F05 5, mRNA sequence.    42  0.080  2
BF479269|BF479269.1 L48-2932T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-2932 5', mRNA sequence.    42  0.082  2
BM301662|BM301662.1 MCR049G09_26366 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR049G09 5, mRNA sequence.    42  0.083  2
BE130787|BE130787.1 L48-1703T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-1703 5', mRNA sequence.    42  0.085  2
BF480184|BF480184.1 L0-2093T3 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L0-2093 5', mRNA sequence.    42  0.085  2
BF480414|BF480414.1 L0-2346T3 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L0-2346 5', mRNA sequence.    42  0.086  2
BE577264|BE577264.1 L48-2084T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-2084 5', mRNA sequence.    42  0.087  2
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_4(AC117070|pid:none) Dictyostelium discoideum chromosom...   174   2e-42
CR382137_1052(CR382137|pid:none) Debaryomyces hansenii chromosom...    96   7e-19
FM992692_375(FM992692|pid:none) Candida dubliniensis CD36 chromo...    93   4e-18
CP000499_280(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    93   4e-18
AF467942_1(AF467942|pid:none) Xenopus laevis translation initiat...    92   6e-18
AJ617304_5(AJ617304|pid:none) Kluyveromyces lactis MAT locus, co...    92   6e-18
AP003290_12(AP003290|pid:none) Oryza sativa Japonica Group genom...    92   1e-17
PDBN(2IF1) MOL_ID: 1;MOL_ID: 1; MOLECULE: EIF1; MOLECULE: EIF1; ...    91   1e-17
CS559880_1(CS559880|pid:none) Sequence 467 from Patent WO2006032...    91   2e-17
AF100737_1(AF100737|pid:none) Homo sapiens putative translation ...    91   2e-17
protein update 2009. 6.10
PSORT 

 psg: 0.72  gvh: 0.31  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SSC808 is nuc
5' end seq. ID SSC808F
5' end seq. 
>SSC808F.Seq
AAAAAAAAAAGTTATAAAGAGCAACTCTAAACTTTTTATTAGATCCATAGTATTACTATA
TCACATTTTACTCGTATGAGCTCAATTCAAAATCTTAACTCAGCTGACCCATTTGCTGAA
GACTCTAATTTAGGTGGAGACTCAGGTATCAGTTACGTCCATATTCGTATTTTCCAAAGA
AGCGGCCGTAAAGCAGTAACAACCGTAGAAGGATTACCACCTAAGATTGACTTGAAAAAA
ATTTTGAAACATCTTAAGAAATCATTAAATTGTAATGGAAACATAGTAGAAGAAGAAAAC
CTTGGTATGGTTCTTCAACTCCAAGGAGATAAAAGAAAAGAAATCGCTCTCTTTTTAATT
GAAGAGAAGATCTCCCAAAAACCATCTATCAAGATACATGGTTTCTAAAAGAAAAAGAAT
GTGAACAAAAAAAAAAAAAGAAGAAAATCAAAAAAAAAAAAAGATAAAAACAAATTAAAC
ATTTATCTTTTTTCTCTTTTCTTTTTTTTTTTTTTTATAA----------
Length of 5' end seq. 520
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -