SSC788 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSC788
Library	SS (Link to library)
Clone ID	SSC788 (Link to dictyBase)
Atlas ID	-
NBRP ID	G20844
dictyBase ID	DDB0187889
Link to Contig	Contig-U04777-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSC7-D/SSC788Q.Seq.d/
Representative seq. ID	SSC788E (Link to Original site)
Representative DNA sequence	>SSC788 (SSC788Q) /CSM/SS/SSC7-D/SSC788Q.Seq.d/ GAAAAAATTCAAAGAATTTCAGATTTAGTAGCAGCATATCAAAAAGTTTCATCATTTAAA AAGATAGAAAAGAAATTAAATAATGGAAAATCATATAAAATTAAAAAAATATTTTAATGA GAGGAAGATATTATTATCCAGCTAAAGTTAATAGAAAGAGTGCATCACATATNACATTAA TTAAAAACACAGCAATGAATACATTTCAAAATATAGAGGAAGCAACTGATGAAGAAATCT ACAATAGAATGTACGCAGCCAGACAAAGAGAGAAAATGTTGAAAACAAGTGCTTTCGTTC AATCCTTTTTGGGTATGGCTGGTCAAAGTTACCAAAAAGCATTACAAAAACATGGTTTAA CTTCAAGTGATGGTACTTTTGAATATAATGAAGAAGATGATGAAGATTATGAACCTTCTG AAAGTGATGATGATGATGATGAAGGTGAACAAAATGGCGAAGAAGAGGATAATTCTGATA CTGAAGATGAAGAAGAACAACAATTAAAACAACTTGAAGCTAAAAATGAAGAAGATGAAG AATTTGAAGAACAAGAAATAGATGAAGATGAAGAAGAAGTAGATGAGGATGAAGAAAATG GCGAAGATGAAGGTTTTGAAATGGAAGATGATTTTGAGATTTTGAAGATTCTGAATAAAA CTAAATAGTAACAAAAAAAAAAAAAAAAAAACAACTGTTCTCATAAATAATTCATTCATT TAAATTATTCAA
sequence update	1999. 4. 2
Translated Amino Acid sequence	knsknfrfsssisksfiikdrkeikwkiinKNILMRGRYYYPAKVNRKSASHXTLI KNTAMNTFQNIEEATDEEIYNRMYAARQREKMLKTSAFVQSFLGMAGQSYQKALQKHGLT SSDGTFEYNEEDDEDYEPSESDDDDDEGEQNGEEEDNSDTEDEEEQQLKQLEAKNEEDEE FEEQEIDEDEEEVDEDEENGEDEGFEMEDDFEILKILNKTK*qkkkkknncshkfihl nys
Translated Amino Acid sequence (All Frames)	Frame A: ekiqrisdlvaayqkvssfkkiekklnngksykikkif*eediiiqlkliervhhixh lktqqihfkirkqlmkkstiectqpdkerkckqvlsfnpfwvwlvkvtkkhyknmv lqvmvllnimkkmmkimnllkvmmmmmkvnkmakkriililkmkknnnnnlklkmkkmk nlknkkmkmkkkmrmkkmakmkvlkwkmilrfrfiklnsnkkkkkkttvlinnsfi iiq Frame B: kkfkefqi*qhikkfhhlkrkrnimenhiklkkyfnerkillsss*kecityxin khsneyiskyrgsn*rnlqnvrsqtkrenvenkcfrsilfgygwsklpksitktwfn fkwyfirrrltfk*****rtkwrrrgfyrrrttikttskrrr irtrnrrrrsrgrkwrrrfngrfdfedsenivtkkkkkkqlfsiihsf klf Frame C: knsknfrfsssisksfiikdrkeikwkiinKNILMRGRYYYPAKVNRKSASHXTLI KNTAMNTFQNIEEATDEEIYNRMYAARQREKMLKTSAFVQSFLGMAGQSYQKALQKHGLT SSDGTFEYNEEDDEDYEPSESDDDDDEGEQNGEEEDNSDTEDEEEQQLKQLEAKNEEDEE FEEQEIDEDEEEVDEDEENGEDEGFEMEDDFEILKILNKTK*qkkkkknncshkfihl nys
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSC788 (SSC788Q) /CSM/SS/SSC7-D/SSC788Q.Seq.d/ 563 e-159 SHA355 (SHA355Q) /CSM/SH/SHA3-C/SHA355Q.Seq.d/ 42 0.012 CHN274 (CHN274Q) /CSM/CH/CHN2-D/CHN274Q.Seq.d/ 42 0.012 AHH728 (AHH728Q) /CSM/AH/AHH7-B/AHH728Q.Seq.d/ 42 0.012 AFL480 (AFL480Q) /CSM/AF/AFL4-D/AFL480Q.Seq.d/ 42 0.012 VHQ280 (VHQ280Q) /CSM/VH/VHQ2-D/VHQ280Q.Seq.d/ 36 0.72 VHP796 (VHP796Q) /CSM/VH/VHP7-D/VHP796Q.Seq.d/ 36 0.72 VHO573 (VHO573Q) /CSM/VH/VHO5-D/VHO573Q.Seq.d/ 36 0.72 VHO568 (VHO568Q) /CSM/VH/VHO5-C/VHO568Q.Seq.d/ 36 0.72 VHO556 (VHO556Q) /CSM/VH/VHO5-C/VHO556Q.Seq.d/ 36 0.72
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AX535056\|AX535056.1 Sequence 83 from Patent WO02068633. 38 0.43 2 AK056724\|AK056724.1 Homo sapiens cDNA FLJ32162 fis, clone PLACE6000325. 38 0.46 2 AC114067\|AC114067.4 Rattus norvegicus clone CH230-200F11, WORKING DRAFT SEQUENCE, 1 ordered piece. 40 0.49 5 BM882146\|BM882146.1 rb26d03.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence. 46 0.60 1 BI501832\|BI501832.1 rm05f08.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5', mRNA sequence. 46 0.60 1 BM774808\|BM774808.1 ra97h06.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence. 46 0.60 1 BX323994\|BX323994.3 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone CH211-273A5. 40 1.1 5 AC096177\|AC096177.6 Rattus norvegicus clone CH230-11D4, * SEQUENCING IN PROGRESS , 1 ordered piece. 44 1.2 4 AC118291\|AC118291.5 Rattus norvegicus clone CH230-261G11, SEQUENCING IN PROGRESS *, 1 ordered piece. 40 1.5 5 AL732618\|AL732618.6 Human DNA sequence from clone RP11-25L19 on chromosome 1. 40 1.8 3
dna update	2003. 7.30
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP001614_3761(CP001614\|pid:none) Teredinibacter turnerae T7901, ... 35 3.1 AE014188_417(AE014188\|pid:none) Plasmodium falciparum 3D7 chromo... 33 9.1 AM398681_1484(AM398681\|pid:none) Flavobacterium psychrophilum JI... 33 9.1
protein update	2009. 7. 6
PSORT	psg: 0.63 gvh: 0.27 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.47 mip: 0.08 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 60.0 %: mitochondrial 20.0 %: nuclear 12.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: endoplasmic reticulum >> prediction for SSC788 is mit
5' end seq. ID	SSC788F
5' end seq.	>SSC788F.Seq GAAAAAATTCAAAGAATTTCAGATTTAGTAGCAGCATATCAAAAAGTTTCATCATTTAAA AAGATAGAAAAGAAATTAAATAATGGAAAATCATATAAAATTAAAAAAATATTTTTAATG AGAGGAAGATATTATTATCCAGCTAAAGTTAATAGAAAGAGTGCATCACATATAACATTA ATTAAAAACACAGCAATGAATACATTTCAAAATATAGAGGAAGCAACTGATGAAGAAATC TACAATAGAATGTACGCAGCCAGACAAAGAGAGAAAATGTTGAAAACAAGTGCTTTCGTT CAATCCTTTTTGGGTATGGCTGGTCAAAGTTACCAAAAAGCATTACAAAAACATGGTTTA ACTTCAAGTGATGGTACTTTTGAATATAATGAAGAAGATGATGAAGATTATGAACCTTCT GAAAGTGATGATGATGATGATGAAGGTGAACAAAATGGCGAAGAAGAGGATAATTCTGAT ACTGAAGATGAAGAAGAACAACAATTAAAACAACTTGAAGCTAAAAATGAAGAAGATGAA GAATTTGAAGAACAAGAAATAGATGAAGATGAAGAAGAAGTAGATGAGGATGAAGAAAAT GGCGAAGATGAAGGTTTTGAAATGGAAGATGATTTTGA----------
Length of 5' end seq.	638
3' end seq. ID	SSC788Z
3' end seq.	>SSC788Z.Seq ----------AATGAGAGGAAGATATTATTATCCAGCTAAAGTTAATAGAAAGAGTGCAT CACATATCACATTAATTAAAAACACAGCAATGAATACATTTCAAAATATAGAGGAAGCAA CTGATGAAGAAATCTACAATAGAATGTACGCAGCCAGACAAAGAGAGAAAATGTTGAAAA CAAGTGCTTTCGTTCAATCCTTTTTGGGTATGGCTGGTCAAAGTTACCAAAAAGCATTAC AAAAACATGGTTTAACTTCAAGTGATGGTACTTTTGAATATAATGAAGAAGATGATGAAG ATTATGAACCTTCTGAAAGTGATGATGATGATGATGAAGGTGAACAAAATGGCGAAGAAG AGGATAATTCTGATACTGAAGATGAAGAAGAACAACAATTAAAACAACTTGAAGCTAAAA ATGAAGAAGATGAAGAATTTGAAGAACAAGAAATAGATGAAGATGAAGAAGAAGTAGATG AGGATGAAGAAAATGGCGAAGATGAAGGTTTTGAAATGGAAGATGATTTTGAAGATTCTG AATAAAACTAAATAGTAACAAAAAAAAAAAAAAAAAAACAACTGTTCTCATAAATAATTC ATTCATTTAAATTATTCAAAATAATATTA
Length of 3' end seq.	619
Connected seq. ID	SSC788P
Connected seq.	>SSC788P.Seq GAAAAAATTCAAAGAATTTCAGATTTAGTAGCAGCATATCAAAAAGTTTCATCATTTAAA AAGATAGAAAAGAAATTAAATAATGGAAAATCATATAAAATTAAAAAAATATTTTTAATG AGAGGAAGATATTATTATCCAGCTAAAGTTAATAGAAAGAGTGCATCACATATAACATTA ATTAAAAACACAGCAATGAATACATTTCAAAATATAGAGGAAGCAACTGATGAAGAAATC TACAATAGAATGTACGCAGCCAGACAAAGAGAGAAAATGTTGAAAACAAGTGCTTTCGTT CAATCCTTTTTGGGTATGGCTGGTCAAAGTTACCAAAAAGCATTACAAAAACATGGTTTA ACTTCAAGTGATGGTACTTTTGAATATAATGAAGAAGATGATGAAGATTATGAACCTTCT GAAAGTGATGATGATGATGATGAAGGTGAACAAAATGGCGAAGAAGAGGATAATTCTGAT ACTGAAGATGAAGAAGAACAACAATTAAAACAACTTGAAGCTAAAAATGAAGAAGATGAA GAATTTGAAGAACAAGAAATAGATGAAGATGAAGAAGAAGTAGATGAGGATGAAGAAAAT GGCGAAGATGAAGGTTTTGAAATGGAAGATGATTTTGA----------AATGAGAGGAAG ATATTATTATCCAGCTAAAGTTAATAGAAAGAGTGCATCACATATCACATTAATTAAAAA CACAGCAATGAATACATTTCAAAATATAGAGGAAGCAACTGATGAAGAAATCTACAATAG AATGTACGCAGCCAGACAAAGAGAGAAAATGTTGAAAACAAGTGCTTTCGTTCAATCCTT TTTGGGTATGGCTGGTCAAAGTTACCAAAAAGCATTACAAAAACATGGTTTAACTTCAAG TGATGGTACTTTTGAATATAATGAAGAAGATGATGAAGATTATGAACCTTCTGAAAGTGA TGATGATGATGATGAAGGTGAACAAAATGGCGAAGAAGAGGATAATTCTGATACTGAAGA TGAAGAAGAACAACAATTAAAACAACTTGAAGCTAAAAATGAAGAAGATGAAGAATTTGA AGAACAAGAAATAGATGAAGATGAAGAAGAAGTAGATGAGGATGAAGAAAATGGCGAAGA TGAAGGTTTTGAAATGGAAGATGATTTTGAAGATTCTGAATAAAACTAAATAGTAACAAA AAAAAAAAAAAAAAAACAACTGTTCTCATAAATAATTCATTCATTTAAATTATTCAAAAT AATATTA
Length of connected seq.	1257
Full length Seq ID	SSC788E
Full length Seq.	>SSC788E.Seq GAAAAAATTCAAAGAATTTCAGATTTAGTAGCAGCATATCAAAAAGTTTCATCATTTAAA AAGATAGAAAAGAAATTAAATAATGGAAAATCATATAAAATTAAAAAAATATTTTAATGA GAGGAAGATATTATTATCCAGCTAAAGTTAATAGAAAGAGTGCATCACATATNACATTAA TTAAAAACACAGCAATGAATACATTTCAAAATATAGAGGAAGCAACTGATGAAGAAATCT ACAATAGAATGTACGCAGCCAGACAAAGAGAGAAAATGTTGAAAACAAGTGCTTTCGTTC AATCCTTTTTGGGTATGGCTGGTCAAAGTTACCAAAAAGCATTACAAAAACATGGTTTAA CTTCAAGTGATGGTACTTTTGAATATAATGAAGAAGATGATGAAGATTATGAACCTTCTG AAAGTGATGATGATGATGATGAAGGTGAACAAAATGGCGAAGAAGAGGATAATTCTGATA CTGAAGATGAAGAAGAACAACAATTAAAACAACTTGAAGCTAAAAATGAAGAAGATGAAG AATTTGAAGAACAAGAAATAGATGAAGATGAAGAAGAAGTAGATGAGGATGAAGAAAATG GCGAAGATGAAGGTTTTGAAATGGAAGATGATTTTGAGATTTTGAAGATTCTGAATAAAA CTAAATAGTAACAAAAAAAAAAAAAAAAAAACAACTGTTCTCATAAATAATTCATTCATT TAAATTATTCAA
Length of full length seq.	732

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas