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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC786
Library SS
(Link to library)
Clone ID SSC786
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12922-1
Original site URL
Representative seq. ID SSC786E
(Link to Original site)
Representative DNA sequence 
>SSC786 (SSC786Q) /CSM/SS/SSC7-D/SSC786Q.Seq.d/
ACAGGTGCATCCTTGAAATTAACTTTATTAAATCCAAAAGGAAGAATATGGGCAATGGTT
GCCGGAGGTGGTGCCTCTGTTATCTATGCTGACACTGTTGCTGATTTAGGTTTTGGTAAT
GAGCTTGGAAATTATGGTGAATATTCCGGTGATCCAAATGAAGAGGATACTCATAAATAT
GCATGCACTTTAATTTCATTGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATTATTA
ATTGGTGGTGGTATTGCTAATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCATTAGA
GCAATTAAAGAGTATCATGATGATATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGA
GGTGGTCCAAATTATCAATCGGGTTTACAACATATGAGAGAAATTGGTCATAAATTACAT
ATCCCAATCAAAGTTTTCGGTCCTGAAGTTAATATGACAAGTATTGTTGCAATGGCAATC
CAACATATTAATGTACCTATTGTTAATCCTTTAAAACCACAAACAAATAATTTTTCACCA
ACTTTAAATGGTGTTCATTAAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 8.17
Translated Amino Acid sequence 
TGASLKLTLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKY
ACTLISLATRNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRR
GGPNYQSGLQHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSP
TLNGVH*kf*kkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
TGASLKLTLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKY
ACTLISLATRNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRR
GGPNYQSGLQHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSP
TLNGVH*kf*kkkkkkk


Frame B:
qvhp*n*ly*iqkeeygqwlpevvpllsmltllli*vlvmsleimvnipviqmkrilinm
hal*fhwqpeilildqehy*lvvvllillmwlplskvsleqlksimmislnqifpfslee
vvqiinrvyni*eklvinyisqskfsvlkli*qvllqwqsnilmylllil*nhkqiifhq
l*mvfiknfkkkkkkkk


Frame C:
rcileinfikskrknmgngcrrwclcylc*hcc*frfw**awklw*ifr*sk*rgys*ic
mhfnfignqks*f*tksiinwwwyc*fy*cgchfqryh*sn*rvs**yh*iksfhfr*kr
wsklsigfttyernws*itypnqsfrs*s*ydkyccngnpty*ctyc*sfkttnk*fftn
fkwcslkilkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB813 (VSB813Q) /CSM/VS/VSB8-A/VSB813Q.Seq.d/                       1126   0.0
SSC786 (SSC786Q) /CSM/SS/SSC7-D/SSC786Q.Seq.d/                       1126   0.0
VFF648 (VFF648Q) /CSM/VF/VFF6-B/VFF648Q.Seq.d/                       1118   0.0
VFF576 (VFF576Q) /CSM/VF/VFF5-D/VFF576Q.Seq.d/                       1112   0.0
CFF880 (CFF880Q) /CSM/CF/CFF8-D/CFF880Q.Seq.d/                       1112   0.0
VSB133 (VSB133Q) /CSM/VS/VSB1-B/VSB133Q.Seq.d/                       1106   0.0
VFF631 (VFF631Q) /CSM/VF/VFF6-B/VFF631Q.Seq.d/                       1096   0.0
AFM446 (AFM446Q) /CSM/AF/AFM4-B/AFM446Q.Seq.d/                       1096   0.0
SLC828 (SLC828Q) /CSM/SL/SLC8-B/SLC828Q.Seq.d/                       1059   0.0
AFA176 (AFA176Q) /CSM/AF/AFA1-D/AFA176Q.Seq.d/                       1035   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM108865|BM108865.1 EST556401 potato roots Solanum tuberosum cDNA clone cPRO2F7 5' end, mRNA sequence.    52  2e-14  4
BQ512190|BQ512190.1 EST619605 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 5' end, mRNA sequence.    52  2e-14  4
CA932300|CA932300.1 MTU5CS.P11.B11 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  5e-13  3
BQ512191|BQ512191.1 EST619606 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 3' end, mRNA sequence.    52  6e-12  3
BE451022|BE451022.1 EST401909 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY16M5, mRNA sequence.    44  8e-10  3
AW156815|AW156815.1 se31b11.y1 Gm-c1015 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1015-2806 5' similar to TR:O80526 O80526 F19J9.9 PROTEIN. ;, mRNA sequence.    60  9e-09  2
BG441140|BG441140.1 GA__Ea0011O01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0011O01f, mRNA sequence.    48  3e-08  3
BI969259|BI969259.1 GM830007B20C12 Gm-r1083 Glycine max cDNA clone Gm-r1083-2448 3', mRNA sequence.    58  5e-08  2
CB970649|CB970649.1 CAB10004_IIIa_Fa_G05 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10004_IIIa_Fa_G05 5', mRNA sequence.    54  2e-07  3
CB975029|CB975029.1 CAB30006_IIc_Fa_B01 Cabernet Sauvignon Berry Stage I - CAB3 Vitis vinifera cDNA clone CAB30006_IIc_Fa_B01 5', mRNA sequence.    54  3e-07  3
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT070808_1(BT070808|pid:none) Picea sitchensis clone WS02750_O19...   220   3e-56
AB036847_1(AB036847|pid:none) Ciona intestinalis Ci-ACL mRNA for...   218   1e-55
AJ344108_1(AJ344108|pid:none) Lupinus albus mRNA for ATP citrate...   218   1e-55
AC003970_9(AC003970|pid:none) Arabidopsis thaliana chromosome I ...   217   2e-55
(Q91V92) RecName: Full=ATP-citrate synthase;          EC=2.3.3.8...   216   4e-55
AK162364_1(AK162364|pid:none) Mus musculus adult male epididymis...   216   4e-55
AJ851548_1(AJ851548|pid:none) Gallus gallus mRNA for hypothetica...   216   5e-55
BC100618_1(BC100618|pid:none) Rattus norvegicus ATP citrate lyas...   215   6e-55
(P53396) RecName: Full=ATP-citrate synthase;          EC=2.3.3.8...   215   6e-55
AK295675_1(AK295675|pid:none) Homo sapiens cDNA FLJ56442 complet...   215   6e-55
protein update 2009. 7. 6
PSORT 

 psg: 0.72  gvh: 0.48  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSC786 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC786E
Full length Seq. 
>SSC786E.Seq
ACAGGTGCATCCTTGAAATTAACTTTATTAAATCCAAAAGGAAGAATATGGGCAATGGTT
GCCGGAGGTGGTGCCTCTGTTATCTATGCTGACACTGTTGCTGATTTAGGTTTTGGTAAT
GAGCTTGGAAATTATGGTGAATATTCCGGTGATCCAAATGAAGAGGATACTCATAAATAT
GCATGCACTTTAATTTCATTGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATTATTA
ATTGGTGGTGGTATTGCTAATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCATTAGA
GCAATTAAAGAGTATCATGATGATATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGA
GGTGGTCCAAATTATCAATCGGGTTTACAACATATGAGAGAAATTGGTCATAAATTACAT
ATCCCAATCAAAGTTTTCGGTCCTGAAGTTAATATGACAAGTATTGTTGCAATGGCAATC
CAACATATTAATGTACCTATTGTTAATCCTTTAAAACCACAAACAAATAATTTTTCACCA
ACTTTAAATGGTGTTCATTAAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 593