SSC770
Library SS
(Link to library)
Clone ID SSC770
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04772-1
Original site URL
Representative seq. ID SSC770F
(Link to Original site)
Representative DNA sequence
>SSC770 (SSC770Q) /CSM/SS/SSC7-C/SSC770Q.Seq.d/
CATCATCCTCATATATATAAAAAAAAAAAAAAAATGATGATAAAATTATCCTTATTATTT
ATCATTGCGATTATTTTTAATGTTGGATCAGCAGTTTATTTTGAATTAAATGGTGGTCAA
ACTAAATGTTTTATAGAAGANNATCCAAAAGATACAACAGTATTAGGAAAATATATTTTA
GAGGATATCACACCAXXXXXXXXXX
sequence update 1998. 9. 9
Translated Amino Acid sequence
HHPHIYKKKKKMMIKLSLLFIIAIIFNVGSAVYFELNGGQTKCFIEXXPKDTTVLGKYIL
EDIT---


Translated Amino Acid sequence (All Frames)
Frame A:
HHPHIYKKKKKMMIKLSLLFIIAIIFNVGSAVYFELNGGQTKCFIEXXPKDTTVLGKYIL
EDIT---


Frame B:
iiliyikkkkk***nypyylslrlflmldqqfiln*mvvklnvl*kxiqkiqqy*enif*
rish---


Frame C:
sssyi*kkkknddkiiliiyhcdyf*cwisslf*ikwwsn*mfyrrxskrynsirkiyfr
gyht---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC770 (SSC770Q) /CSM/SS/SSC7-C/SSC770Q.Seq.d/ 307 3e-83
SSC765 (SSC765Q) /CSM/SS/SSC7-C/SSC765Q.Seq.d/ 307 3e-83
VSF640 (VSF640Q) /CSM/VS/VSF6-B/VSF640Q.Seq.d/ 295 1e-79
VSB543 (VSB543Q) /CSM/VS/VSB5-B/VSB543Q.Seq.d/ 78 6e-14
SSF515 (SSF515Q) /CSM/SS/SSF5-A/SSF515Q.Seq.d/ 52 3e-06
VSJ183 (VSJ183Q) /CSM/VS/VSJ1-D/VSJ183Q.Seq.d/ 36 0.19
FC-AA12 (FC-AA12Q) /CSM/FC/FC-AA/FC-AA12Q.Seq.d/ 36 0.19
SSD648 (SSD648Q) /CSM/SS/SSD6-B/SSD648Q.Seq.d/ 34 0.75
SSB533 (SSB533Q) /CSM/SS/SSB5-B/SSB533Q.Seq.d/ 34 0.75
SFC464 (SFC464Q) /CSM/SF/SFC4-C/SFC464Q.Seq.d/ 34 0.75

own update 2004. 7.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AB112543) Dictyostelium discoideum empC gene for emp24/gp25... 307 2e-84 2
(AU071934) Dictyostelium discoideum slug cDNA, clone SSC770. 307 2e-84 2
(AU071932) Dictyostelium discoideum slug cDNA, clone SSC765. 307 4e-83 2
(AU265544) Dictyostelium discoideum vegetative cDNA clone:VS... 295 3e-76 1
(AU262085) Dictyostelium discoideum vegetative cDNA clone:VS... 78 1e-10 1
(C92861) Dictyostelium discoideum slug cDNA, clone SSF515. 52 0.008 1
(ET088985) QM0AAA13BD10FM1 CCL1 Citrus clementina genomic cl... 36 0.37 2
(AC158022) Bos taurus clone CH240-132G10, WORKING DRAFT SEQU... 34 1.0 2
(AC196745) Citrus sinensis clone CSRBBa-010A22, WORKING DRAF... 34 1.1 2
(BV054980) S212P6926FE5.T0 CZECHII/Ei Mus musculus STS genom... 34 1.2 2
dna update 2009. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM920437_1876(AM920437|pid:none) Penicillium chrysogenum Wiscons... 44 0.001
AY849658_1(AY849658|pid:none) Magnaporthe grisea ERP1 protein-li... 39 0.042
(Q9BVK6) RecName: Full=Transmembrane emp24 domain-containing pro... 38 0.094
BC001123_1(BC001123|pid:none) Homo sapiens transmembrane emp24 p... 38 0.094
X90872_1(X90872|pid:none) H.sapiens mRNA for gp25L2 protein. 38 0.094
AK313292_1(AK313292|pid:none) Homo sapiens cDNA, FLJ93804, highl... 38 0.094
EU934418_1(EU934418|pid:none) TSA: Anopheles darlingi AD-295 emp... 38 0.094
BX295540_3(BX295540|pid:none) Neurospora crassa DNA linkage grou... 38 0.12
AK169001_1(AK169001|pid:none) Mus musculus 17 days embryo kidney... 37 0.16
(Q99KF1) RecName: Full=Transmembrane emp24 domain-containing pro... 37 0.16
protein update 2009. 6. 9
PSORT

psg: 0.86 gvh: 0.61 alm: 0.22 top: -0.10 tms: 0.07 mit: 0.30 mip: 0.00
nuc: 0.11 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.31 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: Golgi
16.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for SSC770 is cyt

5' end seq. ID SSC770F
5' end seq.
>SSC770F.Seq
CATCATCCTCATATATATAAAAAAAAAAAAAAAATGATGATAAAATTATCCTTATTATTT
ATCATTGCGATTATTTTTAATGTTGGATCAGCAGTTTATTTTGAATTAAATGGTGGTCAA
ACTAAATGTTTTATAGAAGANNATCCAAAAGATACAACAGTATTAGGAAAATATATTTTA
GAGGATATCACACCA----------
Length of 5' end seq. 195
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -