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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC741
Library SS
(Link to library)
Clone ID SSC741
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15330-1
Original site URL
Representative seq. ID SSC741Z
(Link to Original site)
Representative DNA sequence 
>SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/
XXXXXXXXXXAATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTGAGCTCA
TTAGAAGAATTAAAAGATTTAATTTGCAAACNAAAAATGCTTATTAATTAAATATAGTAA
AGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACAAACAAAA
TTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAAACTATGA
TGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTT
GGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACC
ATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCGT
TTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGATAT
CGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGA
TCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAAAG
CGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGA
TTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATC
sequence update 1997. 9. 3
Translated Amino Acid sequence 
---sshlwsnv*rkdh*ah*kn*ki*FANXKCLLIKYSKDTRYNDNIDKSFLVTHDKQNY
QAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTFQRKPF
QSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGCYNSDQ
NEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs*lylyiinyn
Translated Amino Acid sequence (All Frames) 
Frame A:
---iqvifgpmfsgkttelirrikrfnlqtknay*lnivkildititlinhf*lpmtnki
iklshvqf*kmlknkhktmm*lvlmkanfsqtlynlvktwqikvkpl*lph*mvpskenh
snqsli*yqrlnilqs*lpfvwfatmkppfqnvsskvmisn*lvv*inifpfavvativi
kmkeivpnqakphvililkahhpllhll*tlilmii*imiinyedpnyictl*iii


Frame B:
---fksslvqclaerplssleelkdlickxkmlin*i**ry*i*r*h**iifsyp*qtkl
ssfpmfnfrrc*rtstkl*cnwy**rpifprrcti**rlgksr*nryncrtrwylpkkti
pish*fsikg*iyykvncrlygllq*srlfktyrrk**yrinwwyr*iyfrlpwllq**s
k*rk*yqtkqnrtsfsfskrtircstcckh*s**sfk**llimkiliifvhykl*


Frame C:
---sshlwsnv*rkdh*ah*kn*ki*FANXKCLLIKYSKDTRYNDNIDKSFLVTHDKQNY
QAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSEDLANQGKTVIIAALDGTFQRKPF
QSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKYISVCRGCYNSDQ
NEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs*lylyiinyn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                       1382   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                       1362   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                       1360   0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/                       1296   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                       1273   0.0
VHQ109 (VHQ109Q) /CSM/VH/VHQ1-A/VHQ109Q.Seq.d/                       1245   0.0
VSJ693 (VSJ693Q) /CSM/VS/VSJ6-D/VSJ693Q.Seq.d/                       1215   0.0
VSI601 (VSI601Q) /CSM/VS/VSI6-A/VSI601Q.Seq.d/                       1201   0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                       1156   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                       1156   0.0
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.  1239  0.0  2
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.  1183  0.0  2
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence.    56  4e-06  2
BG661802|BG661802.1 kx06e10.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:KITH_CAPVK P16600 THYMIDINE KINASE ;, mRNA sequence.    44  0.002  2
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  0.004  2
BQ089799|BQ089799.1 rc53b07.y2 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:KITH_CAPVK P16600 THYMIDINE KINASE ;, mRNA sequence.    40  0.025  2
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50  0.038  1
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50  0.038  1
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34  0.14  7
AC111507|AC111507.5 Rattus norvegicus clone CH230-132D21, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32  0.33  7
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   178   6e-50
(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   178   6e-50
BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol...   177   1e-49
K02581_1(K02581|pid:none) Human thymidine kinase mRNA, complete ...   177   1e-49
AB451268_1(AB451268|pid:none) Homo sapiens TK1 mRNA for thymidin...   176   2e-49
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   176   2e-49
(P04184) RecName: Full=Thymidine kinase, cytosolic;          EC=...   175   4e-49
M11945_1(M11945|pid:none) Mouse cytosolic thymidine kinase mRNA ...   174   6e-49
(P09768) RecName: Full=Thymidine kinase, cytosolic;          EC=...   174   8e-49
DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   174   2e-48
protein update 2009. 6. 9
PSORT 

 psg: 0.39  gvh: 0.25  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSC741 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC741Z
3' end seq. 
>SSC741Z.Seq
----------AATTCAAGTCATCTTTGGTCCAATGTTTAGCGGAAAGACCACTGAGCTCA
TTAGAAGAATTAAAAGATTTAATTTGCAAACNAAAAATGCTTATTAATTAAATATAGTAA
AGATACTAGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACAAACAAAA
TTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAAACTATGA
TGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTT
GGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACC
ATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCGT
TTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGATAT
CGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGA
TCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAAAG
CGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGA
TTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATC
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -