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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC733
Library SS
(Link to library)
Clone ID SSC733
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04767-1
Original site URL
Representative seq. ID SSC733E
(Link to Original site)
Representative DNA sequence 
>SSC733 (SSC733Q) /CSM/SS/SSC7-B/SSC733Q.Seq.d/
AAAAACCTTNNATTTTTTTTTAAATATAATAAAAGAGAATGGCTAGAACAAAATGGAGAT
CTCCAGGTCATAAATATGCTAAAAAGGCAGAAGCCAGACTTAAAAAACAAGAAGAAGGTG
AAGAAGTTGAAGAAGAAGTTGAAGAAGAAGGTGGTGCAAGTGACGAAAGTGGTGGAGAGA
AAAAGAAAGTTGTAGTAAAAAAATCTAAAACACCAATTACATCATCATCATCATCATCAT
CATCGTCATCCACCAATGATAAATCATTTAATCTTTCAGATAAAAGAAAAATCTCATATA
GTAACTTTAAAGGTTTGGAACGTATTGATATCCGTGAATTTTTTGAAGATAAATCTGGTG
AATTAAAACCAAGTTCAAAAGGTATTTCATTAACAAGAGAACAATTTATGGTTATATTAG
AAAATGGTGATACGATTAAAGATTGGATAAAAGAAAGTAAATAAACTATTAAAAATAAAA
AAAATTCATTAAAAACCTTAATATTAAACAAATAAAAAATACATGCAAAAAAATTTTTGA
AAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 9. 3
Translated Amino Acid sequence 
kpxiff*i**KRMARTKWRSPGHKYAKKAEARLKKQEEGEEVEEEVEEEGGASDESGGEK
KKVVVKKSKTPITSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGE
LKPSSKGISLTREQFMVILENGDTIKDWIKESK*tiknkknslktlilnk*kihakkflk
kkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
knlxfffkynkrewleqngdlqvinmlkrqkpdlknkkkvkklkkklkkkvvqvtkvver
krkl**knlkhqlhhhhhhhhrhppminhlifqikekshivtlkvwnvlisvnflkinlv
n*nqvqkvfh*qennlwly*kmvirlkig*kkvnkllkikkih*kp*y*tnkkymqknf*
kkkkkkkk


Frame B:
ktxxfflniikeng*nkmeisrs*ic*kgrsqt*ktrrr*rs*rrs*rrrwck*rkwwre
kescskki*ntnyiiiiiiiivihq**ii*sfr*kknli**l*rfgty*yp*if*r*iw*
iktkfkryfinkrtiygyirkw*yd*rldkrk*iny*k*kkfiknlnikqikntckkife
kkkkkkk


Frame C:
kpxiff*i**KRMARTKWRSPGHKYAKKAEARLKKQEEGEEVEEEVEEEGGASDESGGEK
KKVVVKKSKTPITSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGE
LKPSSKGISLTREQFMVILENGDTIKDWIKESK*tiknkknslktlilnk*kihakkflk
kkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE448 (VSE448Q) /CSM/VS/VSE4-B/VSE448Q.Seq.d/                        400   e-111
VSB236 (VSB236Q) /CSM/VS/VSB2-B/VSB236Q.Seq.d/                        400   e-111
SSC733 (SSC733Q) /CSM/SS/SSC7-B/SSC733Q.Seq.d/                        400   e-111
VFH577 (VFH577Q) /CSM/VF/VFH5-D/VFH577Q.Seq.d/                         42   0.009
VFB444 (VFB444Q) /CSM/VF/VFB4-B/VFB444Q.Seq.d/                         42   0.009
SSC666 (SSC666Q) /CSM/SS/SSC6-C/SSC666Q.Seq.d/                         42   0.009
SLG703 (SLG703Q) /CSM/SL/SLG7-A/SLG703Q.Seq.d/                         42   0.009
SLC731 (SLC731Q) /CSM/SL/SLC7-B/SLC731Q.Seq.d/                         42   0.009
SLA437 (SLA437Q) /CSM/SL/SLA4-B/SLA437Q.Seq.d/                         42   0.009
SFK801 (SFK801Q) /CSM/SF/SFK8-A/SFK801Q.Seq.d/                         42   0.009
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB005240|AB005240.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16.    40  0.15  2
AL163002|AL163002.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15A17 (ESSA  project).    40  0.18  2
AC124137|AC124137.4 Rattus norvegicus clone CH230-285J20, WORKING DRAFT SEQUENCE, 1 ordered piece.    36  0.84  5
AC106521|AC106521.3 Rattus norvegicus clone CH230-29H24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  1.7  5
AC026222|AC026222.5 Homo sapiens chromosome 10 clone RP11-543D1, complete sequence.    44  1.8  1
AC003670|AC003670.1 Homo sapiens 12q13.1 PAC RPCI1-130F5 (Roswell Park Cancer Institute Human PAC library) complete sequence.    44  1.8  1
BF737748|BF737748.1 PM0-KT0008-121200-001-e03 KT0008 Homo sapiens cDNA, mRNA sequence.    44  1.8  1
AC130929|AC130929.4 Rattus norvegicus clone CH230-364O8, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  1.8  1
AC138300|AC138300.4 Mus musculus chromosome 14 clone RP23-187B20 map 14, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    44  1.8  1
AC098585|AC098585.1 Homo sapiens chromosome 4 clone RP11-25N23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  3.5  2
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN392320_1053(FN392320|pid:none) Pichia pastoris GS115 chromosom...    57   4e-07
BC075111_1(BC075111|pid:none) Xenopus tropicalis activated RNA p...    55   2e-06
BC076294_1(BC076294|pid:none) Danio rerio SUB1 homolog (S. cerev...    54   2e-06
BT081616_1(BT081616|pid:none) Rana catesbeiana clone rcat-evr-51...    54   3e-06
BC095096_1(BC095096|pid:none) Danio rerio zgc:109973, mRNA (cDNA...    53   5e-06
(Q5ZK63) RecName: Full=Activated RNA polymerase II transcription...    52   1e-05
(P11031) RecName: Full=Activated RNA polymerase II transcription...    52   1e-05
AY584192_1(AY584192|pid:none) Homo sapiens clone Va non-infected...    52   1e-05
AK146335_1(AK146335|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...    52   1e-05
BC009610_1(BC009610|pid:none) Homo sapiens SUB1 homolog (S. cere...    52   1e-05
protein update 2009. 7. 6
PSORT 

 psg: 0.56  gvh: 0.21  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.03
 nuc: 0.12  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SSC733 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSC733E
Full length Seq. 
>SSC733E.Seq
AAAAACCTTNNATTTTTTTTTAAATATAATAAAAGAGAATGGCTAGAACAAAATGGAGAT
CTCCAGGTCATAAATATGCTAAAAAGGCAGAAGCCAGACTTAAAAAACAAGAAGAAGGTG
AAGAAGTTGAAGAAGAAGTTGAAGAAGAAGGTGGTGCAAGTGACGAAAGTGGTGGAGAGA
AAAAGAAAGTTGTAGTAAAAAAATCTAAAACACCAATTACATCATCATCATCATCATCAT
CATCGTCATCCACCAATGATAAATCATTTAATCTTTCAGATAAAAGAAAAATCTCATATA
GTAACTTTAAAGGTTTGGAACGTATTGATATCCGTGAATTTTTTGAAGATAAATCTGGTG
AATTAAAACCAAGTTCAAAAGGTATTTCATTAACAAGAGAACAATTTATGGTTATATTAG
AAAATGGTGATACGATTAAAGATTGGATAAAAGAAAGTAAATAAACTATTAAAAATAAAA
AAAATTCATTAAAAACCTTAATATTAAACAAATAAAAAATACATGCAAAAAAATTTTTGA
AAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 564