SSC729
Library SS
(Link to library)
Clone ID SSC729
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSC729F
(Link to Original site)
Representative DNA sequence
>SSC729 (SSC729Q) /CSM/SS/SSC7-B/SSC729Q.Seq.d/
ACTAATTAAAAAATGACTCATCCACATTGCCATAAAAAAGAACAAATTAGAATCAGAAAA
CCAGCTCCAGCTTTCAAAGGTCAAGCTGTTGTCAATGGTGAATTCAAAGAAATCTCATTA
GATGACTACAAAGGTAAATACTTATACCTCTTCTTCTACCCATTAGATTTCACTTTTGTA
TGCCCAACTGAAATTATTGCTTTCAGTAATGCTGCTGAAGAATTCAAAAAAGCCGGCTGT
GAACTTGTTGGTTGTTCAATTGATTCACCATTCACCCATTTAGCTTGGATCAATACCCCA
CGTAAAGAAGGTGGTTTAGGTGGAATCAACATCCCACTCTTATCCGATTTAACCCATCAA
ATCTCAAAAGACTACGGTGTTTACATTGAAGAAGATGGTCACACCATTAGAGGTAGCATT
CTCATCGACAAAGAAGGTCTTGTTAGAGTCATTACAATGAACGATAATCCAGTTGGCCGT
AGTGTAGATGAAGCAATCCGTACTTTGAAAGCCTTGAAGTTTACAGATCAATTCGGCGAG
GTATGTCCAGCCAATTGGTCAGAGGGCGATAAATCAATGAAAGCAGATCCAAAAGGTTCA
AAAGAATACTTTGAAGCTGTTAATAAATAAATGGTTCAATCCTTTTTTGTAATTCTCTCA
TCATAAAAAAAAAXXXXXXXXXX
sequence update 1998. 9. 9
Translated Amino Acid sequence
tn*KMTHPHCHKKEQIRIRKPAPAFKGQAVVNGEFKEISLDDYKGKYLYLFFYPLDFTFV
CPTEIIAFSNAAEEFKKAGCELVGCSIDSPFTHLAWINTPRKEGGLGGINIPLLSDLTHQ
ISKDYGVYIEEDGHTIRGSILIDKEGLVRVITMNDNPVGRSVDEAIRTLKALKFTDQFGE
VCPANWSEGDKSMKADPKGSKEYFEAVNK*mvqsffvilss*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
tn*KMTHPHCHKKEQIRIRKPAPAFKGQAVVNGEFKEISLDDYKGKYLYLFFYPLDFTFV
CPTEIIAFSNAAEEFKKAGCELVGCSIDSPFTHLAWINTPRKEGGLGGINIPLLSDLTHQ
ISKDYGVYIEEDGHTIRGSILIDKEGLVRVITMNDNPVGRSVDEAIRTLKALKFTDQFGE
VCPANWSEGDKSMKADPKGSKEYFEAVNK*mvqsffvilss*kk---


Frame B:
likk*lihiaikknklesenqlqlskvkllsmvnskksh*mttkvntytsssth*islly
aqlklllsvmllknskkpavnllvvqlihhspi*lgsiphvkkvv*vestshsypi*pik
sqkttvftlkkmvtplevafsstkkvlleslq*tiiqlavv*mkqsvl*kp*slqinsar
yvqpigqrainq*kqiqkvqkntlkllinkwfnpfl*fshhkk---


Frame C:
*lkndsstlp*krtn*nqktsssfqrssccqw*iqrnlir*lqr*iliplllpirfhfcm
pn*nycfq*cc*riqksrl*tcwlfn*ftihpfsldqypt*rrwfrwnqhptlirfnpsn
lkrlrclh*rrwshh*r*hshrqrrsc*shyner*sswp*cr*snpyfeslevyrsirrg
mssqlvrgr*inesrskrfkril*sc**ingsilfcnsliikk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC729 (SSC729Q) /CSM/SS/SSC7-B/SSC729Q.Seq.d/ 1316 0.0
FC-BK24 (FC-BK24Q) /CSM/FC/FC-BK/FC-BK24Q.Seq.d/ 1316 0.0
SSM818 (SSM818Q) /CSM/SS/SSM8-A/SSM818Q.Seq.d/ 1308 0.0
CHR425 (CHR425Q) /CSM/CH/CHR4-B/CHR425Q.Seq.d/ 1281 0.0
VSD664 (VSD664Q) /CSM/VS/VSD6-C/VSD664Q.Seq.d/ 1255 0.0
VHN816 (VHN816Q) /CSM/VH/VHN8-A/VHN816Q.Seq.d/ 1255 0.0
CFI647 (CFI647Q) /CSM/CF/CFI6-B/CFI647Q.Seq.d/ 1255 0.0
AHF142 (AHF142Q) /CSM/AH/AHF1-B/AHF142Q.Seq.d/ 1255 0.0
VSJ805 (VSJ805Q) /CSM/VS/VSJ8-A/VSJ805Q.Seq.d/ 1253 0.0
VSH843 (VSH843Q) /CSM/VS/VSH8-B/VSH843Q.Seq.d/ 1235 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***. 1057 0.0 2
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 1057 0.0 2
BQ834951|BQ834951.1 Po_ad_05D11_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_05D11 5' similar to AAK06771 CYTOSOLIC THIOREDOXIN PEROXIDASE VARIANT Drosophila, mRNA sequence. 60 2e-20 3
BQ834873|BQ834873.1 Po_ad_04E05_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_04E05 5' similar to AAK06771 CYTOSOLIC THIOREDOXIN PEROXIDASE VARIANT Drosophila, mRNA sequence. 60 2e-20 3
CA755499| (NM_006406) thioredoxin peroxidase; thioredoxin peroxidase, mRNA sequence. 50 8e-16 3
CD451719|CD451719.1 USDA-FP_104007 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-_A08 5', mRNA sequence. 60 2e-12 3
BI282076|BI282076.1 UI-R-CU0s-cbw-c-05-0-UI.s1 UI-R-CU0s Rattus norvegicus cDNA clone UI-R-CU0s-cbw-c-05-0-UI 3', mRNA sequence. 50 2e-11 4
BY356075|BY356075.1 Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310037A05, 3' end partial sequence. 50 3e-11 3
CB323702|CB323702.1 UI-R-DY0-crh-e-10-0-UI.s1 UI-R-DY0 Rattus norvegicus cDNA clone UI-R-DY0-crh-e-10-0-UI 3', mRNA sequence. 50 3e-11 4
CF109806|CF109806.1 Shultzomica03057 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig2683 5', mRNA sequence. 50 6e-11 4
dna update 2003. 7.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117070_11(AC117070|pid:none) Dictyostelium discoideum chromoso... 426 e-118
BT080003_1(BT080003|pid:none) Esox lucius clone eluc-evq-539-268... 274 2e-72
BC073532_1(BC073532|pid:none) Xenopus laevis MGC82793 protein, m... 272 8e-72
FJ013222_1(FJ013222|pid:none) Seriola lalandi 2-Cys peroxiredoxi... 271 1e-71
BC134156_1(BC134156|pid:none) Danio rerio zgc:162938, mRNA (cDNA... 271 1e-71
(Q9BGI2) RecName: Full=Peroxiredoxin-4; EC=1.11.1.15; A... 271 1e-71
DQ893599_1(DQ893599|pid:none) Synthetic construct clone IMAGE:10... 271 2e-71
(Q13162) RecName: Full=Peroxiredoxin-4; EC=1.11.1.15; A... 270 2e-71
BT047733_1(BT047733|pid:none) Salmo salar clone ssal-sjb-018-310... 269 6e-71
BC087512_1(BC087512|pid:none) Xenopus laevis hypothetical LOC496... 269 6e-71
protein update 2009. 6. 9
PSORT

psg: 0.44 gvh: 0.39 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSC729 is cyt

5' end seq. ID SSC729F
5' end seq.
>SSC729F.Seq
ACTAATTAAAAAATGACTCATCCACATTGCCATAAAAAAGAACAAATTAGAATCAGAAAA
CCAGCTCCAGCTTTCAAAGGTCAAGCTGTTGTCAATGGTGAATTCAAAGAAATCTCATTA
GATGACTACAAAGGTAAATACTTATACCTCTTCTTCTACCCATTAGATTTCACTTTTGTA
TGCCCAACTGAAATTATTGCTTTCAGTAATGCTGCTGAAGAATTCAAAAAAGCCGGCTGT
GAACTTGTTGGTTGTTCAATTGATTCACCATTCACCCATTTAGCTTGGATCAATACCCCA
CGTAAAGAAGGTGGTTTAGGTGGAATCAACATCCCACTCTTATCCGATTTAACCCATCAA
ATCTCAAAAGACTACGGTGTTTACATTGAAGAAGATGGTCACACCATTAGAGGTAGCATT
CTCATCGACAAAGAAGGTCTTGTTAGAGTCATTACAATGAACGATAATCCAGTTGGCCGT
AGTGTAGATGAAGCAATCCGTACTTTGAAAGCCTTGAAGTTTACAGATCAATTCGGCGAG
GTATGTCCAGCCAATTGGTCAGAGGGCGATAAATCAATGAAAGCAGATCCAAAAGGTTCA
AAAGAATACTTTGAAGCTGTTAATAAATAAATGGTTCAATCCTTTTTTGTAATTCTCTCA
TCATAAAAAAAAA----------
Length of 5' end seq. 673
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -