NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC687
Library SS
(Link to library)
Clone ID SSC687
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16145-1
Original site URL
Representative seq. ID SSC687Z
(Link to Original site)
Representative DNA sequence 
>SSC687 (SSC687Q) /CSM/SS/SSC6-D/SSC687Q.Seq.d/
XXXXXXXXXXATTGTATTAATTTTGGTCAACAAGTGTAATGTTTAGCAGATTATATAATG
GTCATCATACACCAATGGATGTTATTGCAGGTTTAATTGTCGCAATTACATCAATATTAG
CAACAACATATCAACTTAGATATTTTATTGAAGGAATGGTATTATCTGAAACCTTTTTAT
TTGGACCAATGCTTTATATGGCAATTTTATCAGCAATTTTGTTTTTCCATCCACAAGCAA
ACACTGGACCAACACCAGCATATCCAGAGACTGGTTTGGTTTGTGGTGCAAGTTTAGGTT
CTTTAATTAGTTTATGGCTTCATGCTCAACATCCATGTCCATTAATGAATCGAGGAGGAT
TATTATTAGAAGCNAATTATGATTCAATAGTTTCAACAANTCATTCAATTCCATTATTAC
TTCATGGTAGTAGAATTTTAATTGGTTTGGTTTTAGTTGGTATAGCAAAAGTTTTCTCAA
AGAAATTCTTTTTCTTTGCTTATGATTTGGTAATTAGAGCAAATACAAATAATGAACAAT
CTCAACCAATCACTACAGTTTCATTCGATCCAAATAAAAAGATCATAGTCACTCCAACAA
TTGAAGCTTTCTCAAAATTGTTTGTTTACACTTGTGTTAGTTTCACTATCGTTTCAATGC
CATACTTATTTTATTATTTAAATATTCAAACTTCTGCTGATGTAACAAGATATTATTAGG
AAATTTAAAAAAAAAAAAAGAAAAAAAAAAAGAAAA
sequence update 1997. 9. 3
Translated Amino Acid sequence 
---ly*FWSTSVMFSRLYNGHHTPMDVIAGLIVAITSILATTYQLRYFIEGMVLSETFLF
GPMLYMAILSAILFFHPQANTGPTPAYPETGLVCGASLGSLISLWLHAQHPCPLMNRGGL
LLEANYDSIVSTXHSIPLLLHGSRILIGLVLVGIAKVFSKKFFFFAYDLVIRANTNNEQS
QPITTVSFDPNKKIIVTPTIEAFSKLFVYTCVSFTIVSMPYLFYYLNIQTSADVTRYY*e
i*kkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ly*FWSTSVMFSRLYNGHHTPMDVIAGLIVAITSILATTYQLRYFIEGMVLSETFLF
GPMLYMAILSAILFFHPQANTGPTPAYPETGLVCGASLGSLISLWLHAQHPCPLMNRGGL
LLEANYDSIVSTXHSIPLLLHGSRILIGLVLVGIAKVFSKKFFFFAYDLVIRANTNNEQS
QPITTVSFDPNKKIIVTPTIEAFSKLFVYTCVSFTIVSMPYLFYYLNIQTSADVTRYY*e
i*kkkkkkkkk


Frame B:
---cinfgqqv*cladyimviihqwmllqv*lsqlhqy*qqhinldillkewyylkpfyl
dqcfiwqfyqqfcfsihkqtldqhqhiqrlvwfvvqv*vl*lvygfmlnihvh**ieedy
y*kximiq*fqqxiqfhyyfmvvef*lvwf*lv*qkfsqrnsfsllmiw*leqiqimnnl
nqslqfhsiqikrs*slqqlklsqnclftlvlvslsfqchtyfii*ifklllm*qdiirk
fkkkkrkkkrk


Frame C:
---vlilvnkcnv*qii*wssytngcycrfncrnyinisnnist*ify*rngii*nlfiw
tnalygnfisnfvfpstskhwtntsisrdwfglwckfrffn*fmascstsmsinesrrii
irsxl*fnsfnxsfnsiitsw**nfnwfgfswysksflkeilflcl*fgn*skyk**tis
tnhysfirsk*kdhshsnn*sflkivclhlc*fhyrfnailillfkysnfc*cnkillgn
lkkkkekkke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC687 (SSC687Q) /CSM/SS/SSC6-D/SSC687Q.Seq.d/                       1407   0.0
VFF459 (VFF459Q) /CSM/VF/VFF4-C/VFF459Q.Seq.d/                       1261   0.0
CHA237 (CHA237Q) /CSM/CH/CHA2-B/CHA237Q.Seq.d/                       1225   0.0
AFK361 (AFK361Q) /CSM/AF/AFK3-C/AFK361Q.Seq.d/                       1098   0.0
SSI274 (SSI274Q) /CSM/SS/SSI2-D/SSI274Q.Seq.d/                       1065   0.0
SSE389 (SSE389Q) /CSM/SS/SSE3-D/SSE389Q.Seq.d/                       1049   0.0
CHA637 (CHA637Q) /CSM/CH/CHA6-B/CHA637Q.Seq.d/                        165   1e-39
VFA522 (VFA522Q) /CSM/VF/VFA5-A/VFA522Q.Seq.d/                        145   1e-33
AFN710 (AFN710Q) /CSM/AF/AFN7-A/AFN710Q.Seq.d/                        145   1e-33
SSL160 (SSL160Q) /CSM/SS/SSL1-C/SSL160Q.Seq.d/                         40   0.048
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.  1294  0.0  2
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    36  0.12  7
AZ670282|AZ670282.1 ENTMN84TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.22  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          34  0.33  10
AC026064|AC026064.3 Homo sapiens chromosome 1 clone RP11-229M5, WORKING DRAFT SEQUENCE, 36 unordered pieces.    38  0.34  6
BZ398443|BZ398443.1 EINDT34TR EI_10_12_KB Entamoeba invadens genomic clone EINDT34, DNA sequence.    36  0.57  3
BM164745|BM164745.1 EST567268 PyBS Plasmodium yoelii yoelii cDNA clone PYCMA82 5' end, mRNA sequence.    40  0.62  2
AA830383|AA830383.1 oc64h02.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:1354515 3', mRNA sequence.    46  0.62  1
AC011639|AC011639.9 Homo sapiens clone RP11-13H19, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46  0.62  1
AI623265|AI623265.1 tu50c01.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE:2254464 3', mRNA sequence.    46  0.62  1
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55A00) RecName: Full=Probable sphingosine-1-phosphate phosphat...   431   e-119
BC126582_1(BC126582|pid:none) Bos taurus sphingosine-1-phosphate...    50   1e-04
AF349315_1(AF349315|pid:none) Homo sapiens sphingosine-1-phospha...    45   0.002
AK154116_1(AK154116|pid:none) Mus musculus NOD-derived CD11c +ve...    44   0.004
(Q99P55) RecName: Full=Sphingosine-1-phosphate phosphatase 1;   ...    43   0.009
AE001437_2363(AE001437|pid:none) Clostridium acetobutylicum ATCC...    40   0.078
BC106904_1(BC106904|pid:none) Homo sapiens sphingosine-1-phospha...    40   0.10
CU638743_428(CU638743|pid:none) Podospora anserina genomic DNA c...    39   0.17
CP000975_1452(CP000975|pid:none) Methylacidiphilum infernorum V4...    39   0.23
AM502250_281(AM502250|pid:none) Leishmania infantum chromosome 32.     39   0.23
protein update 2009. 6. 9
PSORT 

 psg: 0.69  gvh: 0.58  alm: 0.27  top: 0.40  tms: 0.33  mit: 0.32  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SSC687 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC687Z
3' end seq. 
>SSC687Z.Seq
----------ATTGTATTAATTTTGGTCAACAAGTGTAATGTTTAGCAGATTATATAATG
GTCATCATACACCAATGGATGTTATTGCAGGTTTAATTGTCGCAATTACATCAATATTAG
CAACAACATATCAACTTAGATATTTTATTGAAGGAATGGTATTATCTGAAACCTTTTTAT
TTGGACCAATGCTTTATATGGCAATTTTATCAGCAATTTTGTTTTTCCATCCACAAGCAA
ACACTGGACCAACACCAGCATATCCAGAGACTGGTTTGGTTTGTGGTGCAAGTTTAGGTT
CTTTAATTAGTTTATGGCTTCATGCTCAACATCCATGTCCATTAATGAATCGAGGAGGAT
TATTATTAGAAGCNAATTATGATTCAATAGTTTCAACAANTCATTCAATTCCATTATTAC
TTCATGGTAGTAGAATTTTAATTGGTTTGGTTTTAGTTGGTATAGCAAAAGTTTTCTCAA
AGAAATTCTTTTTCTTTGCTTATGATTTGGTAATTAGAGCAAATACAAATAATGAACAAT
CTCAACCAATCACTACAGTTTCATTCGATCCAAATAAAAAGATCATAGTCACTCCAACAA
TTGAAGCTTTCTCAAAATTGTTTGTTTACACTTGTGTTAGTTTCACTATCGTTTCAATGC
CATACTTATTTTATTATTTAAATATTCAAACTTCTGCTGATGTAACAAGATATTATTAGG
AAATTTAAAAAAAAAAAAAGAAAAAAAAAAAGAAAA
Length of 3' end seq. 746
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -