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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC673
Library SS
(Link to library)
Clone ID SSC673
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSC673Z
(Link to Original site)
Representative DNA sequence 
>SSC673 (SSC673Q) /CSM/SS/SSC6-D/SSC673Q.Seq.d/
XXXXXXXXXXGATTCATATTCATCAAATAGTAATGGTGGTTTATTTAAAAATTTAAAGAA
TTCAGTTGAAGAATCAAAATCACACATTTTCGTTCCATCATCAGAAGTTGGAGTTTTAAA
TATTGTATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACAC
CCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCCTCAAAAATTCAACC
AACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTNAAAATCAAGACTC
AACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGC
TGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATT
TTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAG
TTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTC
TGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTC
TGATCTCCAAGTTCCAGATAGATACGAAGCCCCAAAGAGCAAAGTACTTTAAAAAAANAA
AAATAATAAAAAATTAATACCAAATAATTTATAAAACAAAAAAAAAAAAAAAAAA
sequence update 1997. 9. 3
Translated Amino Acid sequence 
---SYSSNSNGGLFKNLKNSVEESKSHIFVPSSEVGVLNIVSQLKGIKGSVFVAKESDTQ
FEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAXNQDSTIKQFQSVVEKSSFVSFFTAA
SAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSA
YLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kxknnkklipnnl*nkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ihihqivmvvylki*riqlknqnhtfsfhhqklef*ilyhn*kvskdqfllpknltp
nlklkvpkifyyqkpqkfnqpyqtkllis*lfyslkiktqpsnnsnlllknhhsflslll
lllmnlmfkllstnklnnhfykmvhhh*iqpankvvdqvvqdqmnqlnnislmllvqsfl
li*lsqsy*pfyslvfvvfliskfqidtkpqrakyfkkxkiikn*yqiiyktkkkkk


Frame B:
---fifik**wwfi*kfkefs*rikithfrsiirswsfkycitikryqrisfccqri*hp
i*n*rcpkyfiirslknstnlikqsc*yrscftrxksrlnhqtipicc*kiiirfflycc
fcs*i*cssyfqqts*tiiftrwfiiikfsqptr*wik*frik*tn*ttfhlcywsspfc
lfdylnlishfihwyllyf*spssr*irspkeqstlkkxk**kintk*fikqkkkkk


Frame C:
---SYSSNSNGGLFKNLKNSVEESKSHIFVPSSEVGVLNIVSQLKGIKGSVFVAKESDTQ
FEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAXNQDSTIKQFQSVVEKSSFVSFFTAA
SAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSA
YLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kxknnkklipnnl*nkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC673 (SSC673Q) /CSM/SS/SSC6-D/SSC673Q.Seq.d/                       1259   0.0
SSE549 (SSE549Q) /CSM/SS/SSE5-C/SSE549Q.Seq.d/                       1251   0.0
SSC826 (SSC826Q) /CSM/SS/SSC8-B/SSC826Q.Seq.d/                       1251   0.0
SSF812 (SSF812Q) /CSM/SS/SSF8-A/SSF812Q.Seq.d/                       1243   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                       1229   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                       1178   0.0
SSF225 (SSF225Q) /CSM/SS/SSF2-B/SSF225Q.Seq.d/                       1152   0.0
VSI650 (VSI650Q) /CSM/VS/VSI6-C/VSI650Q.Seq.d/                       1148   0.0
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/                       1136   0.0
SSA685 (SSA685Q) /CSM/SS/SSA6-D/SSA685Q.Seq.d/                       1136   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   658  0.0  3
AC021652|AC021652.20 Homo sapiens chromosome 3 clone RP11-23K7, WORKING DRAFT SEQUENCE, 36 unordered pieces.    38  0.021  4
AQ553866|AQ553866.1 RPCI-11-417D10.TV RPCI-11 Homo sapiens genomic clone RPCI-11-417D10 , DNA sequence.    40  0.28  2
AQ516440|AQ516440.1 HS_5070_B2_C01_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=646 Col=2 Row=F, genomic survey sequence.    40  0.40  2
AZ518161|AZ518161.1 RPCI-11-252F12.TV RPCI-11 Homo sapiens genomic clone RPCI-11-252F12 , DNA sequence.    40  0.43  2
AC128926|AC128926.3 Rattus norvegicus clone CH230-357J9, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.58  5
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46  0.59  1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.59  1
AC115411|AC115411.4 Rattus norvegicus clone CH230-207J17, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    46  0.59  1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.59  1
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   260   3e-68
protein update 2009. 1.27
PSORT 

 psg: 0.76  gvh: 0.40  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSC673 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC673Z
3' end seq. 
>SSC673Z.Seq
----------GATTCATATTCATCAAATAGTAATGGTGGTTTATTTAAAAATTTAAAGAA
TTCAGTTGAAGAATCAAAATCACACATTTTCGTTCCATCATCAGAAGTTGGAGTTTTAAA
TATTGTATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACAC
CCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCCTCAAAAATTCAACC
AACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTNAAAATCAAGACTC
AACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGC
TGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATT
TTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAG
TTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTC
TGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTC
TGATCTCCAAGTTCCAGATAGATACGAAGCCCCAAAGAGCAAAGTACTTTAAAAAAANAA
AAATAATAAAAAATTAATACCAAATAATTTATAAAACAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 705
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -