>SSC664 (SSC664Q) /CSM/SS/SSC6-C/SSC664Q.Seq.d/
CAATTTGCAGATGAAAATGGACTTATCTTTTTGGAAACATCAGCAAAAACAGCTTCAAAC
GTCGAAGAAGCATTTGTAAATACAGCCTCTAAAATCTATGAAAAAATTCAAAAGGGAGAT
TTCGATATTAACAATGAAAGTTTTGGAATTAAATTAGGTGCACCAACCTCCAAACAAGAT
GGTACCGATCAAAAACCAGCTGGTGGTGGATGTTGCAAATAAATTATTTATCAATATTTC
CTCTATTTAAAAGAAAAAATAAAAAAACATAATAAAAAATAAAAAATAAAAACTTTACAA
AAAAATAATAAAGGTTTTACTTCACTAATTATCCATCCATCCACCCACCCACCACCATCA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAAACAACAACAATAGCATTAGCCAACAA
ACAAACAATATAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX

qfadenglifletsaktasnveeafvntaskiyekiqkgdfdinnesfgiklgaptskqd
gtdqkpagggcck*iiyqyflylkekikkhnkk*KIKTLQKNNKGFTSLIIHPSTHPPPS
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNSISQQTNNIKKKKKKK---

Frame A:
qfadenglifletsaktasnveeafvntaskiyekiqkgdfdinnesfgiklgaptskqd
gtdqkpagggcck*iiyqyflylkekikkhnkk*KIKTLQKNNKGFTSLIIHPSTHPPPS
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNSISQQTNNIKKKKKKK---


Frame B:
nlqmkmdlsfwkhqqkqlqtskkhl*iqplksmkkfkreisiltmkvleln*vhqppnkm
vpiknqlvvdvanklfinissi*kkk*kniiknkk*klykkiikvllh*lsihppthhhq
qqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqtttialankqti*kkkkkkk---


Frame C:
icr*kwtylfgnisknsfkrrrsickysl*nl*knskgrfry*q*kfwn*irctnlqtrw
yrsktswwwmlqinylsifplfkrknkkt**kiknknftkk**rfyftnypsihppttin
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnkqqq*h*ptnkqykkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC664 (SSC664Q) /CSM/SS/SSC6-C/SSC664Q.Seq.d/                        492   e-138
SSF883 (SSF883Q) /CSM/SS/SSF8-D/SSF883Q.Seq.d/                        446   e-124
SSH387 (SSH387Q) /CSM/SS/SSH3-D/SSH387Q.Seq.d/                        420   e-117
VSC545 (VSC545Q) /CSM/VS/VSC5-B/VSC545Q.Seq.d/                         46   5e-04
VSB109 (VSB109Q) /CSM/VS/VSB1-A/VSB109Q.Seq.d/                         46   5e-04
VFI464 (VFI464Q) /CSM/VF/VFI4-C/VFI464Q.Seq.d/                         46   5e-04
SFG815 (SFG815Q) /CSM/SF/SFG8-A/SFG815Q.Seq.d/                         46   5e-04
SFF720 (SFF720Q) /CSM/SF/SFF7-A/SFF720Q.Seq.d/                         46   5e-04
SFE445 (SFE445Q) /CSM/SF/SFE4-B/SFE445Q.Seq.d/                         46   5e-04
SSA774 (SSA774Q) /CSM/SS/SSA7-D/SSA774Q.Seq.d/                         44   0.002

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U02926|U02926.1 Dictyostelium discoideum Ax3 Rab2 mRNA, partial cds.   492  e-136  2
AC008093|AC008093.4 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone BACR07M14, complete sequence.    54  0.002  1
AC140762|AC140762.2 Rattus norvegicus clone CH230-70P5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    54  0.002  1
AC094928|AC094928.7 Rattus norvegicus clone CH230-6D14, WORKING DRAFT SEQUENCE, 4 unordered pieces.    54  0.002  1
BX470160|BX470160.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-25F3.    44  0.002  3
AC095517|AC095517.6 Rattus norvegicus clone CH230-8N11, WORKING DRAFT SEQUENCE, 2 unordered pieces.    52  0.007  1
AC110978|AC110978.5 Rattus norvegicus clone CH230-166C8, WORKING DRAFT SEQUENCE, 4 unordered pieces.    52  0.007  1
AF403131|AF403131.1 Mus musculus G protein-gated K+ channel subunit 4 GIRK4 (Kcnj5) gene, complete cds.    52  0.007  1
BU497913|BU497913.1 PfESToab90a05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence.    52  0.007  1
BI814952|BI814952.1 PfESToaa08d03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence.    52  0.007  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02926_1(U02926|pid:none) Dictyostelium discoideum Ax3 Rab2 mRNA...   150   1e-35
(P36409) RecName: Full=Ras-related protein Rab-2A;                    150   1e-35
(P53994) RecName: Full=Ras-related protein Rab-2A;  &AB232585_1(...    98   1e-19
(P61019) RecName: Full=Ras-related protein Rab-2A;  &(P61105) Re...    94   2e-18
AK297576_1(AK297576|pid:none) Homo sapiens cDNA FLJ51998 complet...    94   2e-18
AY891305_1(AY891305|pid:none) Synthetic construct Homo sapiens c...    94   2e-18
(Q90965) RecName: Full=Ras-related protein Rab-2A;  &S52325(S523...    94   3e-18
BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ...    94   3e-18
BT076392_1(BT076392|pid:none) Caligus rogercresseyi clone crog-e...    92   6e-18
EF457937_1(EF457937|pid:none) Lolium temulentum GTP-binding prot...    92   6e-18

 psg: 0.75  gvh: 0.37  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.88  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SSC664 is mit

>SSC664F.Seq
CAATTTGCAGATGAAAATGGACTTATCTTTTTGGAAACATCAGCAAAAACAGCTTCAAAC
GTCGAAGAAGCATTTGTAAATACAGCCTCTAAAATCTATGAAAAAATTCAAAAGGGAGAT
TTCGATATTAACAATGAAAGTTTTGGAATTAAATTAGGTGCACCAACCTCCAAACAAGAT
GGTACCGATCAAAAACCAGCTGGTGGTGGATGTTGCAAATAAATTATTTATCAATATTTC
CTCTATTTAAAAGAAAAAATAAAAAAACATAATAAAAAATAAAAAATAAAAACTTTACAA
AAAAATAATAAAGGTTTTACTTCACTAATTATCCATCCATCCACCCACCCACCACCATCA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAAACAACAACAATAGCATTAGCCAACAA
ACAAACAATATAAAAAAAAAAAAAAAAAAAAAAAA