SSC652
Library SS
(Link to library)
Clone ID SSC652
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14130-1
Original site URL
Representative seq. ID SSC652Z
(Link to Original site)
Representative DNA sequence
>SSC652 (SSC652Q) /CSM/SS/SSC6-C/SSC652Q.Seq.d/
XXXXXXXXXXTCAGATATTGCTAAAGATCCACCATCCAGCTGCAGTGCTGGTCCAGATAC
AGATGATATTTTCCATTGGACAGCTACTATTATGGGTCCAAAAGACTCACCATACGAAGG
AGGTGTTTTCTTTTTTAATATTAATTTCCCAACAGATTATCCATTTAAACCACCAAAGAT
TAGTTTTGTTACCAAAGTTTACCATCCAAATATTAATGCCAGCGGAAGTATTTGTTTAGA
TATTTTAAAGGAACAATGGAGTCCAGCCTTAACTATTCCAAAAGTTTTACTTTCAATTAG
TGCCCTTTTATCTGACCCAAATCCAGATGATCCTCTTGTACCAGATATTGCCAATTTATT
TAAAACAGACAAAAATAGATTCGAATCTAATGCCCGTGAGTGGACAAGAAAATATGCACA
ATAATTTTTCACGAATAGATAAGGCAACCCAAAAAAAAAAATTTTTTTTGGTGAACGACT
AAACTTTTAAAATAAACAATAGAAGTTCTGTTACAAATCAAAAAAAAAAA
sequence update 1997. 9. 2
Translated Amino Acid sequence
---DIAKDPPSSCSAGPDTDDIFHWTATIMGPKDSPYEGGVFFFNINFPTDYPFKPPKIS
FVTKVYHPNINASGSICLDILKEQWSPALTIPKVLLSISALLSDPNPDDPLVPDIANLFK
TDKNRFESNAREWTRKYAQ*fftnr*gnpkkkiffgerlnf*nkq*kfcykskkk


Translated Amino Acid sequence (All Frames)
Frame A:
---qillkihhpaavlvqiqmifsigqlllwvqkthhtkevfsflilisqqiihlnhqrl
vllpkftiqilmpaevfv*if*rnngvqp*lfqkfyfqlvpfyltqiqmillyqilpiyl
kqtkidsnlmpvsgqenmhnnfsridkatqkkkfflvnd*tfkinnrssvtnqkkk


Frame B:
---ryc*rstiqlqcwsryr*yfpldsyyygskrltirrrcflf*y*fpnrlsi*ttkd*
fcyqslpsky*cqrkylfryfkgtmesslnysksftfn*cpfi*pksr*ssctrycqfi*
nrqk*iri*cp*vdkkictiifhe*irqpkkknffw*ttkllk*tievllqikkk


Frame C:
---DIAKDPPSSCSAGPDTDDIFHWTATIMGPKDSPYEGGVFFFNINFPTDYPFKPPKIS
FVTKVYHPNINASGSICLDILKEQWSPALTIPKVLLSISALLSDPNPDDPLVPDIANLFK
TDKNRFESNAREWTRKYAQ*fftnr*gnpkkkiffgerlnf*nkq*kfcykskkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSC652 (SSC652Q) /CSM/SS/SSC6-C/SSC652Q.Seq.d/ 872 0.0
VSG818 (VSG818Q) /CSM/VS/VSG8-A/VSG818Q.Seq.d/ 864 0.0
VSF889 (VSF889Q) /CSM/VS/VSF8-D/VSF889Q.Seq.d/ 864 0.0
VSC717 (VSC717Q) /CSM/VS/VSC7-A/VSC717Q.Seq.d/ 864 0.0
SSF567 (SSF567Q) /CSM/SS/SSF5-C/SSF567Q.Seq.d/ 864 0.0
AHN338 (AHN338Q) /CSM/AH/AHN3-B/AHN338Q.Seq.d/ 864 0.0
VSJ387 (VSJ387Q) /CSM/VS/VSJ3-D/VSJ387Q.Seq.d/ 850 0.0
SSJ182 (SSJ182Q) /CSM/SS/SSJ1-D/SSJ182Q.Seq.d/ 609 e-173
VSJ287 (VSJ287Q) /CSM/VS/VSJ2-D/VSJ287Q.Seq.d/ 535 e-151
SSL483 (SSL483Q) /CSM/SS/SSL4-D/SSL483Q.Seq.d/ 394 e-109

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AQ842837|AQ842837.1 CpG1269B CpIOWAgDNA1 Cryptosporidium parvum genomic similar to ubiquitin-conjugating enzyme E2-16 KD, DNA sequence. 64 4e-23 5
BI506579|BI506579.1 BB170023A20G10 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170023A20G10 5', mRNA sequence. 54 5e-17 4
BI505398|BI505398.1 BB170020A10G06 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170020A10G06 5', mRNA sequence. 54 6e-17 4
BI507129|BI507129.1 BB170024A20H01 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170024A20H01 5', mRNA sequence. 54 7e-17 4
BI505480|BI505480.1 BB170031A10H04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170031A10H04 5', mRNA sequence. 54 7e-17 4
BI509967|BI509967.1 BB170026A10F07 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170026A10F07 5', mRNA sequence. 54 7e-17 4
BQ046108|BQ046108.1 EST595226 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI13F10 5' end, mRNA sequence. 52 1e-14 3
AW033420|AW033420.1 EST276991 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28F11 similar to ubiquitin carrier protein (Ubc), mRNA sequence. 52 1e-14 3
BE432882|BE432882.1 EST399327 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG10K8, mRNA sequence. 52 1e-14 3
BE342564|BE342564.1 EST395408 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA20O8, mRNA sequence. 52 1e-14 3
dna update 2003. 7.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P46595) RecName: Full=Ubiquitin-conjugating enzyme E2 4; ... 235 6e-61
AP007167_66(AP007167|pid:none) Aspergillus oryzae RIB40 genomic ... 232 5e-60
AM920435_793(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 231 6e-60
AE017346_284(AE017346|pid:none) Cryptococcus neoformans var. neo... 230 1e-59
CR382125_546(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 229 2e-59
AF325019_1(AF325019|pid:none) Arabidopsis thaliana AT4g27960 (AT... 229 4e-59
EU244369_1(EU244369|pid:none) Haliotis diversicolor clone HDr4CJ... 229 4e-59
CR380951_194(CR380951|pid:none) Candida glabrata strain CBS138 c... 229 4e-59
DQ027023_1(DQ027023|pid:none) Arabidopsis thaliana ubiquitinatin... 229 4e-59
(P35132) RecName: Full=SUMO-conjugating enzyme UBC9; EC... 229 4e-59
protein update 2009. 6. 9
PSORT

psg: 0.75 gvh: 0.23 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SSC652 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC652Z
3' end seq.
>SSC652Z.Seq
----------TCAGATATTGCTAAAGATCCACCATCCAGCTGCAGTGCTGGTCCAGATAC
AGATGATATTTTCCATTGGACAGCTACTATTATGGGTCCAAAAGACTCACCATACGAAGG
AGGTGTTTTCTTTTTTAATATTAATTTCCCAACAGATTATCCATTTAAACCACCAAAGAT
TAGTTTTGTTACCAAAGTTTACCATCCAAATATTAATGCCAGCGGAAGTATTTGTTTAGA
TATTTTAAAGGAACAATGGAGTCCAGCCTTAACTATTCCAAAAGTTTTACTTTCAATTAG
TGCCCTTTTATCTGACCCAAATCCAGATGATCCTCTTGTACCAGATATTGCCAATTTATT
TAAAACAGACAAAAATAGATTCGAATCTAATGCCCGTGAGTGGACAAGAAAATATGCACA
ATAATTTTTCACGAATAGATAAGGCAACCCAAAAAAAAAAATTTTTTTTGGTGAACGACT
AAACTTTTAAAATAAACAATAGAAGTTCTGTTACAAATCAAAAAAAAAAA
Length of 3' end seq. 520
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -